Evidence map›Paper›PMID 21925269›Full record

ArticleMethods (San Diego, Calif.)2011

Efficient expression screening of human membrane proteins in transiently transfected Human Embryonic Kidney 293S cells.

Sarika Chaudhary, John E Pak, Bjørn P Pedersen, Lois J Bang, Liye B Zhang, Samantha M M Ngaw, Raissa G Green, Vinay Sharma, Robert M Stroud

Open access · greenAbstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
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  6. Review
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  9. Current strategies for protein production and purification enabling membrane protein structural biology.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2016
    Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Over-expression of secreted proteins from mammalian cell lines.Protein science : a publication of the Protein Society · 2014
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Sarika ChaudharyDepartment of Biochemistry and Biophysics, University of California, San Francisco, CA 94158, United States.
John E Pak
Bjørn P Pedersen
Lois J Bang
Liye B Zhang
Samantha M M Ngaw
Raissa G Green
Vinay Sharma
Robert M Stroud
University of California, San Francisco · USProtein Express (United States) · USBanasthali University · IN

Funding

Yeast ExpressionP50GM073210 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2004 to 2013
$21.5M
Project 6 (Holton)U54GM094625 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2010 to 2014
$8.0M
STRUCTURE/FUNCTION OF PROTEINS AT MOLECULAR LEVELR01GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 1985 to 2024
$7.5M
Molecular Basis for Transmembrane Conduction & SignalingR37GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2007 to 2016
$4.7M
NIGMS NIH HHS P50 GM073210NIGMS NIH HHS P50 GM73210NIGMS NIH HHS R01 GM024485NIGMS NIH HHS R37 GM024485NIGMS NIH HHS R37 GM24485NIGMS NIH HHS U54 GM094625
6 · The paper itself

Abstract

It is often an immense challenge to overexpress human membrane proteins at levels sufficient for structural studies. The use of Human Embryonic Kidney 293 (HEK 293) cells to express full-length human membrane proteins is becoming increasingly common, since these cells provide a near-native protein folding and lipid environment. Nevertheless, the labor intensiveness and low yields of HEK 293 cells and other mammalian cell expression systems necessitate the screening for suitable expression as early as possible. Here we present our methodology used to generate constructs of human membrane proteins and to rapidly assess their suitability for overexpression using transiently transfected, glycosylation-deficient GnT I-HEK 293 cells (HEK 293S). Constructs, in the presence or absence of a C-terminal enhanced green fluorescence protein (EGFP) molecule, are made in a modular manner, allowing for the rapid generation of several combinations of fusion tags and gene paralogues/orthologues. Solubilization of HEK 293S cells, using a range of detergents, followed by Western blotting is performed to assess relative expression levels and to detect possible degradation products. Fluorescence-detection size exclusion chromatography (FSEC) is employed to assess expression levels and overall homogeneity of the membrane proteins, to rank different constructs for further downstream expression trials. Constructs identified as having high expression are instantly suitable for further downstream large scale transient expression trials and stable cell line generation. The method described is accessible to all laboratory scales and can be completed in approximately 3 weeks.

Indexed as

Blotting, WesternChromatography, GelCloning, MolecularGene ExpressionGenetic VectorsGreen Fluorescent ProteinsHEK293 CellsHumansMembrane ProteinsPolymerase Chain ReactionRecombinant Fusion ProteinsSolubilityTransfectionenhanced green fluorescent proteinGreen Fluorescent ProteinsMembrane ProteinsRecombinant Fusion Proteins

Identifiers

PMID21925269
PMCPMC3600976
OpenAlexW2103364656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.