Evidence map›Paper›PMID 21922540›Full record

ArticleGenetic epidemiology2011

Defining the power limits of genome-wide association scan meta-analyses.

Kay Chapman, Teresa Ferreira, Andrew Morris, Jennifer Asimit, Eleftheria Zeggini

Abstract read
In one paragraph

Article in Genetic epidemiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. How do stochastic processes and genetic threshold effects explain incomplete penetrance and inform causal disease mechanisms?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Statistical and Computational Methods for Genetic Diseases: An Overview.Computational and mathematical methods in medicine · 2015
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kay ChapmanWellcome Trust Centre for Human Genetics, Roosevelt Drive, University of Oxford, Oxford, United Kingdom.
Teresa Ferreira
Andrew Morris
Jennifer Asimit
Eleftheria Zeggini

Funding

Wellcome Trust 088885Wellcome Trust 090532Wellcome Trust WT079557MAWellcome Trust WT081682/Z/06/ZWellcome Trust WT088885/Z/09/Z
6 · The paper itself

Abstract

Large-scale meta-analyses of genome-wide association scans (GWAS) have been successful in discovering common risk variants with modest and small effects. The detection of lower frequency signals will undoubtedly require concerted efforts of at least similar scale. We investigate the sample size-dictated power limits of GWAS meta-analyses, in the presence and absence of modest levels of heterogeneity and across a range of different allelic architectures. We find that data combination through large-scale collaboration is vital in the quest for complex trait susceptibility loci, but that effect size heterogeneity across meta-analyzed studies drawn from similar populations does not appear to have a profound effect on sample size requirements.

Indexed as

Meta-Analysis as TopicGene FrequencyGenetic HeterogeneityGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansModels, GeneticPolymorphism, Single NucleotideSample Size

Identifiers

PMID21922540
PMCPMC3428938

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.