Evidence map›Paper›PMID 21921988›Full record

ArticleMolecular vision2011

Structural and functional properties of NH(2)-terminal domain, core domain, and COOH-terminal extension of αA- and αB-crystallins.

C O Asomugha, R Gupta, O P Srivastava

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Hydrophobic residues of melittin mediate its binding to αA-crystallin.Protein science : a publication of the Protein Society · 2020
    Article
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  13. Novel roles for α-crystallins in retinal function and disease.Progress in retinal and eye research · 2012
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

C O AsomughaDepartment of Vision Sciences, University of Alabama at Birmingham, Birmingham, AL 35294-4390, USA.
R Gupta
O P Srivastava
University of Alabama at Birmingham · US

Funding

Visual Phenotyping CoreP30EY003039 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI LAWRENCE C SINCICH · 1985 to 2026
$16.9M
PROTEINASE INHIBITORS &CRYSTALLIN FRAGMENTS IN CATARACTR01EY006400 · NEI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SRIVASTAVA, OM PRAKASH · 1985 to 2018
$5.6M
NEI NIH HHS EY06400NEI NIH HHS P30 EY003039NEI NIH HHS P30-EY03039NEI NIH HHS R01 EY006400
6 · The paper itself

Abstract

purposeThe purpose of the present study was to determine the biophysical and chaperone properties of the NH(2)-terminal domain, core domain and COOH-terminal extension of human αA- and αB-crystallins and correlate these properties to those of wild type (WT) αA- and αB-crystallins.

methodsWT αA- and αB-crystallins cloned into pET 100D TOPO vector, were used as templates to generate different constructs encoding specific regions (NH(2)-terminal domain [NTD], core domain [CD], and COOH-terminal extension, [CTE]). The specific regions amplified by PCR using plasmid DNA from WT αA and WT αB were: αA NTD (residues 1-63), αA CD (residues 64-142), αA CTE (residues 143-173), αB NTD (residues 1-66), αB CD (residues 67-146), and αB CTE (residues 147-175). Resultant blunt-end PCR products were ligated to a pET 100 Directional TOPO vector. DNA sequencing results confirmed the desired constructs. Positive clones were transformed into the BL21 Star (DE3) expression cell line. Protein expression and solubility were confirmed by SDS-PAGE and western blot analysis using a monoclonal antibody against a 6× His-tag epitope. Proteins were purified using Ni(2+)-affinity column chromatography, under native or denaturing conditions, and used for biophysical and chaperone function analyses.

resultsA total of five constructs were successfully generated: αA NTD, αA CD, αB NTD, αB CD, and αB CTE. SDS-PAGE and western blot analyses showed that αA CD and αB CD were present in both the soluble and insoluble fractions, whereas mutant preparations with NTD alone became insoluble and the mutant with CTE alone became soluble. All purified constructs showed alterations in biophysical properties and chaperone function compared to WT α-crystallins. αA NTD and αB CTE exhibited the most notable changes in secondary structural content. Also, αA NTD and all αB-crystallin constructs showed altered surface hydrophobicity compared to their respective WT α-crystallins.

conclusionsAlthough the individual α-crystallin regions (i.e., NH(2)-terminal domain, core domain, and COOH-terminal extension) exhibited varied biophysical properties, each region alone retained some level of chaperone function. The NH(2)-terminal domains of αA and αB each showed the maximum chaperone activity of the three regions with respect to their WT crystallins.

Indexed as

alpha-Crystallin A Chainalpha-Crystallin B ChainChromatography, GelCircular DichroismCloning, MolecularElectrophoresis, Polyacrylamide GelEscherichia coliHumansHydrophobic and Hydrophilic InteractionsLens, CrystallineMolecular ChaperonesMutagenesis, Site-DirectedMutationPlasmidsProtein Structure, SecondaryProtein Structure, Tertiaryalpha-Crystallin A Chainalpha-Crystallin B ChainMolecular ChaperonesRecombinant Fusion Proteins

Identifiers

PMID21921988
PMCPMC3172050
OpenAlexW1590407931

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.