Evidence map›Paper›PMID 21920452›Full record

ReviewDrug discovery today2011

A conceptual framework for pharmacodynamic genome-wide association studies in pharmacogenomics.

Rongling Wu, Chunfa Tong, Zhong Wang, David Mauger, Kelan Tantisira, Stanley J Szefler, Vernon M Chinchilli, Elliot Israel

Abstract readReview
In one paragraph

Review in Drug discovery today, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Mapping genes for drug chronotherapy.Drug discovery today · 2018
    Review
  5. Article
  6. Article
  7. Asthma Pharmacogenomics: 2015 Update.Current allergy and asthma reports · 2015
    Review
  8. Genome-wide interrogation of longitudinal FEV1 in children with asthma.American journal of respiratory and critical care medicine · 2014
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rongling WuDivision of Biostatistics and Bioinformatics, Pennsylvania State University, Hershey, PA, USA. rwu@hes.hmc.psu.edu
Chunfa Tong
Zhong Wang
David Mauger
Kelan Tantisira
Stanley J Szefler
Vernon M Chinchilli
Elliot Israel

Funding

Data Coordinating Center for the NHLBI Asthma Network (AsthmaNet)U10HL098115 · NHLBI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MAUGER, DAVID T. · 2009 to 2015
$57.6M
PEDIATRIC ASTHMA NETWORK DATA COORDINATING CENTERU10HL064313 · NHLBI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MAUGER, DAVID T. · 1999 to 2008
$18.3M
NHLBI NIH HHS 1U10HL098115NHLBI NIH HHS U10 HL064313NHLBI NIH HHS U10 HL098115
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) have emerged as a powerful tool to identify loci that affect drug response or susceptibility to adverse drug reactions. However, current GWAS based on a simple analysis of associations between genotype and phenotype ignores the biochemical reactions of drug response, thus limiting the scope of inference about its genetic architecture. To facilitate the inference of GWAS in pharmacogenomics, we sought to undertake the mathematical integration of the pharmacodynamic (PD) process of drug reactions through computational models. By estimating and testing the genetic control of PD and pharmacokinetic (PK) parameters, this mechanistic approach does not only enhance the biological and clinical relevance of significant genetic associations, but also improve the statistical power and robustness of gene detection. This report discusses the general principle and development of PDs-based GWAS, highlights the practical use of this approach in addressing various pharmacogenomic problems, and suggests that this approach will be an important method to study the genetic architecture of drug responses or reactions.

Indexed as

Models, GeneticPharmacokineticsDose-Response Relationship, DrugDrug-Related Side Effects and Adverse ReactionsGenome-Wide Association StudyGenotypeHumansInactivation, MetabolicPharmaceutical PreparationsPharmacogeneticsPolymorphism, Single NucleotidePharmaceutical Preparations

Identifiers

PMID21920452
PMCPMC4029408

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.