Evidence map›Paper›PMID 21917949›Full record

ArticleJournal of virology2011

Novel pentameric structure of the diarrhea-inducing region of the rotavirus enterotoxigenic protein NSP4.

Anita R Chacko, Mohammed Arifullah, Narayan P Sastri, Jeyaraman Jeyakanthan, Go Ueno, Kanagaraj Sekar, Randy J Read, Eleanor J Dodson, Durga C Rao, Kaza Suguna

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. EnterotoxigenicPathogens (Basel, Switzerland) · 2022
    Review
  2. Article
  3. Understanding the penetrance of intrinsic protein disorder in rotavirus proteome.International journal of biological macromolecules · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Anita R ChackoMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560012, India.
Mohammed Arifullah
Narayan P Sastri
Jeyaraman Jeyakanthan
Go Ueno
Kanagaraj Sekar
Randy J Read
Eleanor J Dodson
Durga C Rao
Kaza Suguna
Indian Institute of Science Bangalore · INAlagappa University · INSPring-8 · JPUniversity of York · GBWellcome Trust · GB

Funding

Wellcome Trust 082961
6 · The paper itself

Abstract

A novel pentameric structure which differs from the previously reported tetrameric form of the diarrhea-inducing region of the rotavirus enterotoxin NSP4 is reported here. A significant feature of this pentameric form is the absence of the calcium ion located in the core region of the tetrameric structures. The lysis of cells, the crystallization of the region spanning residues 95 to 146 of NSP4 (NSP4(95-146)) of strain ST3 (ST3:NSP4(95-146)) at acidic pH, and comparative studies of the recombinant purified peptide under different conditions by size-exclusion chromatography (SEC) and of the crystal structures suggested pH-, Ca(2+)-, and protein concentration-dependent oligomeric transitions in the peptide. Since the NSP4(95-146) mutant lacks the N-terminal amphipathic domain (AD) and most of the C-terminal flexible region (FR), to demonstrate that the pentameric transition is not a consequence of the lack of the N- and C-terminal regions, glutaraldehyde cross-linking of the ΔN72 and ΔN94 mutant proteins, which contain or lack the AD, respectively, but possess the complete C-terminal FR, was carried out. The results indicate the presence of pentamers in preparations of these longer mutants. Detailed SEC analyses of ΔN94 prepared under different conditions, however, revealed protein concentration-dependent but metal ion- and pH-independent pentamer accumulation at high concentrations which dissociated into tetramers and lower oligomers at low protein concentrations. While calcium appeared to stabilize the tetramer, magnesium in particular stabilized the dimer. ΔN72 existed primarily in the multimeric form under all conditions. These findings of a calcium-free NSP4 pentamer and its concentration-dependent and largely calcium-independent oligomeric transitions open up a new dimension in an understanding of the structural basis of its multitude of functions.

Indexed as

EnterotoxinsAmino Acid SequenceCalciumCrystallizationCrystallography, X-RayDiarrheaGlycoproteinsMagnesiumMolecular Sequence DataMutationPeptide FragmentsProtein MultimerizationRotavirusRotavirus InfectionsToxins, BiologicalViral Nonstructural ProteinsCalciumEnterotoxinsGlycoproteinsMagnesiumNS28 protein, rotavirusPeptide FragmentsToxins, BiologicalViral Nonstructural Proteins

Identifiers

PMID21917949
PMCPMC3209389
OpenAlexW2118171326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.