Evidence map›Paper›PMID 21917897›Full record

ArticleThe Journal of infectious diseases2011

The human transcriptome during nontyphoid Salmonella and HIV coinfection reveals attenuated NFkappaB-mediated inflammation and persistent cell cycle disruption.

Fernanda Schreiber, David J Lynn, Angela Houston, Joanna Peters, Gershom Mwafulirwa, Brett B Finlay, Fiona S L Brinkman, Robert E W Hancock, Robert S Heyderman, Gordon Dougan and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of infectious diseases, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Review
  3. Gene Expression: the Key to Understanding HIV-1 Infection?Microbiology and molecular biology reviews : MMBR · 2020
    Review
  4. Article
  5. mBio · 2018
    Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Critical dynamics in host-pathogen systems.Current topics in microbiology and immunology · 2013
    Review
  14. Review
  15. Article
  16. Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Fernanda SchreiberWellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom.
David J Lynn
Angela Houston
Joanna Peters
Gershom Mwafulirwa
Brett B Finlay
Fiona S L Brinkman
Robert E W Hancock
Robert S Heyderman
Gordon Dougan
Melita A Gordon
Malawi-Liverpool-Wellcome Trust Clinical Research Programme · MWSimon Fraser University · CAUniversity of British Columbia · CAUniversity of Liverpool · GBWellcome Sanger Institute · GB

Funding

Canadian Institutes of Health Research 419Wellcome Trust
6 · The paper itself

Abstract

backgroundInvasive nontyphoid Salmonella (iNTS) disease is common and severe in adults with human immunodeficiency virus (HIV) infection in Africa. We previously observed that ex vivo macrophages from HIV-infected subjects challenged with Salmonella Typhimurium exhibit dysregulated proinflammatory cytokine responses.

methodsWe studied the transcriptional response in whole blood from HIV-positive patients during acute and convalescent iNTS disease compared to other invasive bacterial diseases, and to HIV-positive and -negative controls.

resultsDuring iNTS disease, there was a remarkable lack of a coordinated inflammatory or innate immune signaling response. Few interferon γ (IFNγ)-induced genes or Toll-like receptor/transcription factor nuclear factor κB (TLR/NFκB) gene pathways were upregulated in expression. Ex vivo lipopolysacharide (LPS) or flagellin stimulation of whole blood, however, showed that convalescent iNTS subjects and controls were competent to mount prominent TLR/NFκB-associated patterns of mRNA expression. In contrast, HIV-positive patients with other invasive bacterial infections (Escherichia coli and Streptococcus pneumoniae) displayed a pronounced proinflammatory innate immune transcriptional response. There was also upregulated mRNA expression in cell cycle, DNA replication, translation and repair, and viral replication pathways during iNTS. These patterns persisted for up to 2 months into convalescence.

conclusionsAttenuation of NFκB-mediated inflammation and dysregulation of cell cycle and DNA-function gene pathway expression are key features of the interplay between iNTS and HIV.

Indexed as

AdultAfrica South of the SaharaCluster AnalysisFemaleHIVHIV InfectionsHumansLeukocytes, MononuclearMaleNF-kappa BReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSalmonellaSalmonella InfectionsTranscriptomeNF-kappa BRNA, Messenger

Identifiers

PMID21917897
PMCPMC3173506
OpenAlexW2126392168

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.