ArticleThe Plant cell2011
Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy.
Article in The Plant cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed.
- Genome-Wide Identification of the Soybean UMAMIT Family and Functional Analysis ofInternational journal of molecular sciences · 2026Article
- Genome-Wide Analysis ofInternational journal of molecular sciences · 2026Article
- Characterization ofFrontiers in plant science · 2026Article
- Genome-wide analysis of class III peroxidase gene family in Glycine max and functional roles in stress response.Scientific reports · 2025Article
- Genome-Wide Identification and Comprehensive Analysis of Ubiquitin-Specific Protease Gene Family in Soybean (International journal of molecular sciences · 2025Article
- Genome-Wide Characterization of VDAC Gene Family in Soybean (Plants (Basel, Switzerland) · 2025Article
- Genome-Wide Analysis ofInternational journal of molecular sciences · 2025Article
- Identifying the Soybean microRNAs Related toInternational journal of molecular sciences · 2023Article
- Comprehensive Analysis ofGenes · 2022Article
- Genome-Wide Identification and Expression Analyses of the Chitinase Gene Family in Response to White Mold and Drought Stress in Soybean (Life (Basel, Switzerland) · 2022Article
- Genome-Wide Identification, Expression Patterns and Sugar Transport of the Physic NutInternational journal of molecular sciences · 2022Article
- Progress in soybean functional genomics over the past decade.Plant biotechnology journal · 2022Review
- New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean.BMC genomics · 2021Article
- The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis.BMC genomics · 2021Article
- Orthology and synteny analysis of receptor-like kinases "RLK" and receptor-like proteins "RLP" in legumes.BMC genomics · 2021Article
- Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max).Planta · 2021Article
- Trajectories of Homoeolog-Specific Expression in AllotetraploidFrontiers in plant science · 2021Article
- Article
- Biotechnological Perspectives of Omics and Genetic Engineering Methods in Alfalfa.Frontiers in plant science · 2020Review
- Article
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5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
With the advent of high-throughput sequencing, the availability of genomic sequence for comparative genomics is increasing exponentially. Numerous completed plant genome sequences enable characterization of patterns of the retention and evolution of genes within gene families due to multiple polyploidy events, gene loss and fractionation, and differential evolutionary pressures over time and across different gene families. In this report, we trace the changes that have occurred in 12 surviving homoeologous genomic regions from three rounds of polyploidy that contributed to the current Glycine max genome: a genome triplication before the origin of the rosids (~130 to 240 million years ago), a genome duplication early in the legumes (~58 million years ago), and a duplication in the Glycine lineage (~13 million years ago). Patterns of gene retention following the genome triplication event generally support predictions of the Gene Balance Hypothesis. Finally, we find that genes in networks with a high level of connectivity are more strongly conserved than those with low connectivity and that the enrichment of these highly connected genes in the 12 highly conserved homoeologous segments may in part explain their retention over more than 100 million years and repeated polyploidy events.
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