Evidence map›Paper›PMID 21916405›Full record

ArticleBioconjugate chemistry2011

Development of a pterin-based fluorescent probe for screening dihydropteroate synthase.

Ying Zhao, Dalia Hammoudeh, Wenwei Lin, Sourav Das, Mi-Kyung Yun, Zhenmei Li, Elizabeth Griffith, Taosheng Chen, Stephen W White, Richard E Lee

Abstract readValidation Study
In one paragraph

Article in Bioconjugate chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ying ZhaoDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, Tennessee 38105, United States.
Dalia Hammoudeh
Wenwei Lin
Sourav Das
Mi-Kyung Yun
Zhenmei Li
Elizabeth Griffith
Taosheng Chen
Stephen W White
Richard E Lee

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Novel Inhibitors to DHPS to Probe Catalytic Mechanism & Therapeutic Potential - rR01AI070721 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, RICHARD E., WHITE, STEPHEN W · 2006 to 2015
$4.6M
NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NIAID NIH HHS AI070721NIAID NIH HHS R01 AI070721
6 · The paper itself

Abstract

Dihydropteroate synthase (DHPS) is the classical target of the sulfonamide class of antimicrobial agents, whose use has been limited by widespread resistance and pharmacological side effects. We have initiated a structure-based drug design approach for the development of novel DHPS inhibitors that bind to the highly conserved and structured pterin subsite rather than to the adjacent p-aminobenzoic acid binding pocket that is targeted by the sulfonamide class of antibiotics. To facilitate these studies, a robust pterin site-specific fluorescence polarization (FP) assay has been developed and is discussed herein. These studies include the design, synthesis, and characterization of two fluorescent probes, and the development and validation of a rapid DHPS FP assay. This assay has excellent DMSO tolerance and is highly reproducible as evidenced by a high Z' factor. This assay offers significant advantages over traditional radiometric or phosphate release assays against this target, and is suitable for site-specific high-throughput and fragment-based screening studies.

Indexed as

Bacillus anthracisBinding, CompetitiveBinding SitesDihydropteroate SynthaseFluorescence PolarizationFluorescent DyesPterinsSensitivity and SpecificityDihydropteroate SynthaseFluorescent DyesPterins

Identifiers

PMID21916405
PMCPMC3384522

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.