Evidence map›Paper›PMID 21914784›Full record

ArticlePhysiological genomics2011

Multistate proteomics analysis reveals novel strategies used by a hibernator to precondition the heart and conserve ATP for winter heterothermy.

Katharine R Grabek, Anis Karimpour-Fard, L Elaine Epperson, Allyson Hindle, Lawrence E Hunter, Sandra L Martin

Abstract read
In one paragraph

Article in Physiological genomics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Hibernation reduces cellular damage caused by warm hepatic ischemia-reperfusion in ground squirrels.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2017
    Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Proteomics approaches shed new light on hibernation physiology.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2015
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Substrate-specific changes in mitochondrial respiration in skeletal and cardiac muscle of hibernating thirteen-lined ground squirrels.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2014
    Article
  20. Intrinsic circannual regulation of brown adipose tissue form and function in tune with hibernation.American journal of physiology. Endocrinology and metabolism · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Katharine R GrabekHuman Medical Genetics Program, Department of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, Colorado 80045, USA.
Anis Karimpour-Fard
L Elaine Epperson
Allyson Hindle
Lawrence E Hunter
Sandra L Martin

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025780 · NCRR · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2008 to 2011
$61.3M
Technology Development for a MolBio Knowledge-BaseR01LM008111 · NLM · UNIVERSITY OF COLORADO DENVER · PI HUNTER, LAWRENCE E · 2004 to 2021
$9.7M
Bio Text NLPR01LM009254 · NLM · UNIVERSITY OF COLORADO DENVER · PI HUNTER, LAWRENCE E · 2006 to 2018
$5.9M
Ontologies and Biomedical Language ProcessingR01GM083649 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI HUNTER, LAWRENCE E · 2007 to 2010
$2.5M
Biomarkers for the two phase switches of mammalian hibernationR01HL089049 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI MARTIN, SANDRA L · 2008 to 2011
$1.5M
NCI NIH HHS P30-CA-046934NCRR NIH HHS UL1-RR025780NHLBI NIH HHS HL-089049NIGMS NIH HHS R01GM-083649NLM NIH HHS R01LM-008111NLM NIH HHS R01 LM009254NLM NIH HHS R01LM-009254
6 · The paper itself

Abstract

The hibernator's heart functions continuously and avoids damage across the wide temperature range of winter heterothermy. To define the molecular basis of this phenotype, we quantified proteomic changes in the 13-lined ground squirrel heart among eight distinct physiological states encompassing the hibernator's year. Unsupervised clustering revealed a prominent seasonal separation between the summer homeotherms and winter heterotherms, whereas within-season state separation was limited. Further, animals torpid in the fall were intermediate to summer and winter, consistent with the transitional nature of this phase. A seasonal analysis revealed that the relative abundances of protein spots were mainly winter-increased. The winter-elevated proteins were involved in fatty acid catabolism and protein folding, whereas the winter-depleted proteins included those that degrade branched-chain amino acids. To identify further state-dependent changes, protein spots were re-evaluated with respect to specific physiological state, confirming the predominance of seasonal differences. Additionally, chaperone and heat shock proteins increased in winter, including HSPA4, HSPB6, and HSP90AB1, which have known roles in protecting against ischemia-reperfusion injury and apoptosis. The most significant and greatest fold change observed was a disappearance of phospho-cofilin 2 at low body temperature, likely a strategy to preserve ATP. The robust summer-to-winter seasonal proteomic shift implies that a winter-protected state is orchestrated before prolonged torpor ensues. Additionally, the general preservation of the proteome during winter hibernation and an increase of stress response proteins, together with dephosphorylation of cofilin 2, highlight the importance of ATP-conserving mechanisms for winter cardioprotection.

Indexed as

SeasonsAdenosine TriphosphateAnimalsEnergy MetabolismHeartHeat-Shock ProteinsHibernationPhosphoproteinsProteomicsSciuridaeAdenosine TriphosphateHeat-Shock ProteinsPhosphoproteins

Identifiers

PMID21914784
PMCPMC3217319

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.