Evidence map›Paper›PMID 21912902›Full record

ArticleJapanese journal of ophthalmology2011

Genetic analysis of four Pakistani families with achromatopsia and a novel S4 motif mutation of CNGA3.

Muhammad Arif Nadeem Saqib, Bilal Malik Awan, Mehwish Sarfraz, Muhammad Nasim Khan, Sajid Rashid, Muhammad Ansar

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In one paragraph

Article in Japanese journal of ophthalmology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

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  11. Achromatopsia caused by novel missense mutations in the CNGA3 gene.International journal of ophthalmology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Muhammad Arif Nadeem SaqibDepartment of Biochemistry, Faculty of Biological Sciences, Quaid-i-Azam University, Islamabad, Pakistan.
Bilal Malik Awan
Mehwish Sarfraz
Muhammad Nasim Khan
Sajid Rashid
Muhammad Ansar
Quaid-i-Azam University · PKUniversity of Azad Jammu and Kashmir · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo identify the causative variants of achromatopsia (ACHM) in four Pakistani families presenting autosomal recessive ACHM.

methodsFour families (50, 55, 70 and 74) exhibiting features of achromatopsia were subjected to homozygosity mapping with STS markers flanking known ACHM loci. Mutation screening was done for two of the families linked to CNGA3 and CNGB3 by direct sequencing of the coding regions and exon-intron boundaries of genes to find the pathogenic variant.

resultsHomozygosity mapping showed co-segregation of CNGA3 in family 50 and CNGB3 in family 74. Sequencing of coding regions of CNGA3 in family 50 revealed a novel missense mutation, c.827A>G, in exon 7, which results in p.N276S substitution. N276S is located in the S4 motif of the CNGA3 protein and is conserved in all channel proteins. Bioinformatics analysis showed that the N276S substitution altered the channel conformation by shifting the helix. No pathogenic variation was identified in any affected members of family 74 in the coding sequence of CNGB3. The other two families, 55 and 70, were not linked to any known ACHM loci, indicating further heterogeneity of the ACHM phenotype.

conclusionsWe describe a novel S4 motif mutation of CNGA3 in a Pakistani family.

Indexed as

Mutation, MissenseAgedAmino Acid MotifsAmino Acid SequenceAsian PeopleColor Vision DefectsConsanguinityCyclic Nucleotide-Gated Cation ChannelsDNA Mutational AnalysisElectroretinographyFemaleGenotypeHumansMaleMiddle AgedMolecular Sequence DataCNGA3 protein, humanCyclic Nucleotide-Gated Cation Channels

Identifiers

PMID21912902
OpenAlexW2049081053

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.