Evidence map›Paper›PMID 21912624›Full record

ArticlePloS one2011

Genome-wide functional profiling reveals genes required for tolerance to benzene metabolites in yeast.

Matthew North, Vickram J Tandon, Reuben Thomas, Alex Loguinov, Inna Gerlovina, Alan E Hubbard, Luoping Zhang, Martyn T Smith, Chris D Vulpe

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Observational
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  7. Article
  8. Review
  9. A LignocellulolyticJournal of fungi (Basel, Switzerland) · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Plasma Membrane MCC/Eisosome Domains Promote Stress Resistance in Fungi.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Role ofFrontiers in microbiology · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Matthew NorthDepartment of Nutritional Science and Toxicology, University of California, Berkeley, California, United States of America.
Vickram J Tandon
Reuben Thomas
Alex Loguinov
Inna Gerlovina
Alan E Hubbard
Luoping Zhang
Martyn T Smith
Chris D Vulpe
University of California, Berkeley · US

Funding

Training CoreP42ES004705 · NIEHS · UNIVERSITY OF CALIFORNIA BERKELEY · PI MORELLO-FROSCH, RACHEL ADELE · 1987 to 2025
$74.6M
NIEHS NIH HHS P42 ES004705
6 · The paper itself

Abstract

Benzene is a ubiquitous environmental contaminant and is widely used in industry. Exposure to benzene causes a number of serious health problems, including blood disorders and leukemia. Benzene undergoes complex metabolism in humans, making mechanistic determination of benzene toxicity difficult. We used a functional genomics approach to identify the genes that modulate the cellular toxicity of three of the phenolic metabolites of benzene, hydroquinone (HQ), catechol (CAT) and 1,2,4-benzenetriol (BT), in the model eukaryote Saccharomyces cerevisiae. Benzene metabolites generate oxidative and cytoskeletal stress, and tolerance requires correct regulation of iron homeostasis and the vacuolar ATPase. We have identified a conserved bZIP transcription factor, Yap3p, as important for a HQ-specific response pathway, as well as two genes that encode putative NAD(P)H:quinone oxidoreductases, PST2 and YCP4. Many of the yeast genes identified have human orthologs that may modulate human benzene toxicity in a similar manner and could play a role in benzene exposure-related disease.

Indexed as

GenomicsActive Transport, Cell NucleusAmino Acid SequenceAnimalsBenzeneCell NucleusCluster AnalysisCytoskeletonDose-Response Relationship, DrugEndoplasmic Reticulum StressFungal ProteinsGenes, FungalHomeostasisHumansIronMembrane LipidsBenzeneFungal ProteinsIronMembrane LipidsNADPNAD(P)H Dehydrogenase (Quinone)PhenolsVacuolar Proton-Translocating ATPases

Identifiers

PMID21912624
PMCPMC3166172
OpenAlexW2025517641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.