Evidence map›Paper›PMID 21911500›Full record

ArticleThe Journal of biological chemistry2011

Ouabain binding site in a functioning Na+/K+ ATPase.

Walter Sandtner, Bernhard Egwolf, Fatemeh Khalili-Araghi, Jorge E Sánchez-Rodríguez, Benoit Roux, Francisco Bezanilla, Miguel Holmgren

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 57 citations in OpenAlex.

  1. Exploring the Mechanism of NabioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Testis-Specific Isoform of NaInternational journal of molecular sciences · 2022
    Review
  8. Article
  9. International journal of molecular sciences · 2022
    Article
  10. Article
  11. A NaFrontiers in cell and developmental biology · 2021
    Article
  12. Lyn regulates creatine uptake in an imatinib-resistant CML cell line.Biochimica et biophysica acta. General subjects · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. P2C-Type ATPases and Their Regulation.Molecular neurobiology · 2016
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Walter SandtnerDepartment of Pharmacology, Medical University of Vienna, Waehringer Strasse 13A, 1090 Vienna, Austria.
Bernhard EgwolfDepartment of Theoretical and Computational Biophysics, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Fatemeh Khalili-AraghiDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, Illinois 60637.
Jorge E Sánchez-RodríguezDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, Illinois 60637.
Benoit RouxDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, Illinois 60637. Electronic address: roux@uchicago.edu.
Francisco BezanillaDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, Illinois 60637. Electronic address: fbezanilla@uchicago.edu.
Miguel HolmgrenMolecular Neurophysiology Section, Porter Neuroscience Research Center, NINDS, National Institutes of Health, Bethesda, Maryland 20892. Electronic address: holmgren@ninds.nih.gov.
University of Chicago · USMax Planck Institute for Biophysical Chemistry · DEMedical University of Vienna · ATNational Institutes of Health · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2010 to 2017
$31.9M
Structure and Function of Membrane ProteinsZIANS002993 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI HOLMGREN, MIGUEL · 2009 to 2025
$24.0M
The Electrophysiological Studies of Voltage Gated ChannelsR01GM030376 · NIGMS · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 1985 to 2025
$9.1M
Computational Studies of Ion Channels - Resubmission 01R01GM062342 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2001 to 2022
$8.7M
RNA editing of Transporters and PumpsZIANS003019 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI HOLMGREN, MIGUEL · 2009 to 2018
$5.0M
Intramural NIH HHS ZIA NS002993NIGMS NIH HHS R01 GM030376NIGMS NIH HHS R01-GM030376NIGMS NIH HHS R01 GM062342NIGMS NIH HHS R01-GM062342NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM087519
6 · The paper itself

Abstract

The Na(+)/K(+) ATPase is an almost ubiquitous integral membrane protein within the animal kingdom. It is also the selective target for cardiotonic derivatives, widely prescribed inhibitors for patients with heart failure. Functional studies revealed that ouabain-sensitive residues distributed widely throughout the primary sequence of the protein. Recently, structural work has brought some consensus to the functional observations. Here, we use a spectroscopic approach to estimate distances between a fluorescent ouabain and a lanthanide binding tag (LBT), which was introduced at five different positions in the Na(+)/K(+) ATPase sequence. These five normally functional LBT-Na(+)/K(+) ATPase constructs were expressed in the cell membrane of Xenopus laevis oocytes, operating under physiological internal and external ion conditions. The spectroscopic data suggest two mutually exclusive distances between the LBT and the fluorescent ouabain. From the estimated distances and using homology models of the LBT-Na(+)/K(+) ATPase constructs, approximate ouabain positions could be determined. Our results suggest that ouabain binds at two sites along the ion permeation pathway of the Na(+)/K(+) ATPase. The external site (low apparent affinity) occupies the same region as previous structural findings. The high apparent affinity site is, however, slightly deeper toward the intracellular end of the protein. Interestingly, in both cases the lactone ring faces outward. We propose a sequential ouabain binding mechanism that is consistent with all functional and structural studies.

Indexed as

AnimalsBinding SitesBiophysicsBoron CompoundsFluorescence Resonance Energy TransferMembrane ProteinsModels, StatisticalOocytesOuabainProtein BindingProtein ConformationScattering, RadiationSodium-Potassium-Exchanging ATPaseXenopus laevisX-Rays4,4-difluoro-4-bora-3a,4a-diaza-s-indaceneBoron CompoundsMembrane ProteinsOuabainSodium-Potassium-Exchanging ATPase

Identifiers

PMID21911500
PMCPMC3207469
OpenAlexW2054516746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.