Evidence map›Paper›PMID 21911005›Full record

ArticleJournal of neuroscience methods2012

FACS purification of immunolabeled cell types from adult rat brain.

Danielle Guez-Barber, Sanya Fanous, Brandon K Harvey, Yongqing Zhang, Elin Lehrmann, Kevin G Becker, Marina R Picciotto, Bruce T Hope

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 136 citations in OpenAlex.

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  10. Role of Piriform Cortex and Its Afferent Projections in Relapse to Fentanyl Seeking after Food Choice-Induced Voluntary Abstinence.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2023
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  16. Direct FACS Isolation of Neural Stem/Progenitor Lineages from the Adult Brain.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  17. Article
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  20. Article

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Danielle Guez-BarberBehavioral Neuroscience Branch, IRP/NIDA/NIH/DHHS, 251 Bayview Boulevard, Baltimore, MD 21224, USA. danielle.guez@yale.edu
Sanya Fanous
Brandon K Harvey
Yongqing Zhang
Elin Lehrmann
Kevin G Becker
Marina R Picciotto
Bruce T Hope
United States Department of Health and Human Services · USYale University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Characterization of neuronal ensembles activated during drug-induced behaviorZIADA000467 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI HOPE, BRUCE · 2009 to 2025
$35.8M
Analysis of complex biological systems by microarray based gene expressionZICAG000616 · NIA · NATIONAL INSTITUTE ON AGING · PI DE, SUPRIYO · 2009 to 2025
$15.5M
Phenotype-Specific Immune Responses in the Systemic VasculitidesP30AR053503 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI CASCIOLA-ROSEN, LIVIA A · 2006 to 2015
$6.4M
Anatomical basis for nicotine addiction in miceR01DA014241 · NIDA · YALE UNIVERSITY · PI PICCIOTTO, MARINA R · 2001 to 2018
$5.2M
Anatomical Basis for Nicotine AddictionR37DA014241 · NIDA · YALE UNIVERSITY · PI Marina R Picciotto · 2020 to 2026
$2.7M
ROLE OF THE HIGH AFFINITY NICOTINE RECEPTOR IN ADDICTIONK02DA000436 · NIDA · YALE UNIVERSITY · PI PICCIOTTO, MARINA R · 1999 to 2008
$1.0M
FACS: A novel method to study neurons altered during cocaine sensitizationF30DA024931 · NIDA · YALE UNIVERSITY · PI BARBER, DANIELLE GUEZ · 2009 to 2011
$116k
Intramural NIH HHS ZIA DA000467NIDA NIH HHS DA00436NIDA NIH HHS DA14241NIDA NIH HHS F30 DA024931NIDA NIH HHS F30DA024931NIDA NIH HHS K02 DA000436NIDA NIH HHS R01 DA014241NIDA NIH HHS R37 DA014241NIGMS NIH HHS T32 GM007205NIGMS NIH HHS TG T32GM07205
6 · The paper itself

Abstract

Molecular analysis of brain tissue is greatly complicated by having many different classes of neurons and glia interspersed throughout the brain. Fluorescence-activated cell sorting (FACS) has been used to purify selected cell types from brain tissue. However, its use has been limited to brain tissue from embryos or transgenic mice with promoter-driven reporter genes. To overcome these limitations, we developed a FACS procedure for dissociating intact cell bodies from adult wild-type rat brains and sorting them using commercially available antibodies against intracellular and extracellular proteins. As an example, we isolated neurons using a NeuN antibody and confirmed their identity using microarray and real time PCR of mRNA from the sorted cells. Our FACS procedure allows rapid, high-throughput, quantitative assays of molecular alterations in identified cell types with widespread applications in neuroscience.

Indexed as

AgingAnimalsBrainCell SeparationFlow CytometryHigh-Throughput Screening AssaysImmunohistochemistryNeuronsOligonucleotide Array Sequence AnalysisRatsRats, Sprague-DawleyReal-Time Polymerase Chain ReactionRNA, MessengerRNA, Messenger

Identifiers

PMID21911005
PMCPMC3221768
OpenAlexW2109400558

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.