Evidence map›Paper›PMID 21910480›Full record

ArticleBiochemistry2011

Identification, tissue distribution, and molecular modeling of novel human isoforms of the key enzyme in sialic acid synthesis, UDP-GlcNAc 2-epimerase/ManNAc kinase.

Tal Yardeni, Tsering Choekyi, Katherine Jacobs, Carla Ciccone, Katherine Patzel, Yair Anikster, William A Gahl, Natalya Kurochkina, Marjan Huizing

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Review
  3. Journal of neuromuscular diseases · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Tissue-specific isoform expression of GNE gene in human tissues.Journal of muscle research and cell motility · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. GNE Myopathy: Etiology, Diagnosis, and Therapeutic Challenges.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2018
    Review
  14. Exploration of the Sialic Acid World.Advances in carbohydrate chemistry and biochemistry · 2018
    Review
  15. Identification of anMolecular genetics & genomic medicine · 2017
    Article
  16. Article
  17. GNE myopathy: current update and future therapy.Journal of neurology, neurosurgery, and psychiatry · 2015
    Review
  18. Review
  19. GNE myopathy: new name and new mutation nomenclature.Neuromuscular disorders : NMD · 2014
    Article
  20. Non-specific accumulation of glycosphingolipids in GNE myopathy.Journal of inherited metabolic disease · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Tal YardeniMedical Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Tsering Choekyi
Katherine Jacobs
Carla Ciccone
Katherine Patzel
Yair Anikster
William A Gahl
Natalya Kurochkina
Marjan Huizing
National Human Genome Research Institute · USNational Institutes of Health · USTel Aviv University · ILThe School of Theoretical Modeling · US

Funding

Human Biochemical GeneticsZIAHG000215 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GAHL, WILLIAM · 2009 to 2025
$72.6M
Cell Biology of Metabolic DisordersZIAHG200322 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI GAHL, WILLIAM · 2009 to 2014
$3.1M
Intramural NIH HHS ZIA HG000215Intramural NIH HHS ZIA HG200322
6 · The paper itself

Abstract

UDP-GlcNAc 2-epimerase/ManNAc kinase (GNE) catalyzes the first two committed steps in sialic acid synthesis. In addition to the three previously described human GNE isoforms (hGNE1-hGNE3), our database and polymerase chain reaction analysis yielded five additional human isoforms (hGNE4-hGNE8). hGNE1 is the ubiquitously expressed major isoform, while the hGNE2-hGNE8 isoforms are differentially expressed and may act as tissue-specific regulators of sialylation. hGNE2 and hGNE7 display a 31-residue N-terminal extension compared to hGNE1. On the basis of similarities to kinases and helicases, this extension does not seem to hinder the epimerase enzymatic active site. hGNE3 and hGNE8 contain a 55-residue N-terminal deletion and a 50-residue N-terminal extension compared to hGNE1. The size and secondary structures of these fragments are similar, and modeling predicted that these modifications do not affect the overall fold compared to that of hGNE1. However, the epimerase enzymatic activity of GNE3 and GNE8 is likely absent, because the deleted fragment contains important substrate binding residues in homologous bacterial epimerases. hGNE5-hGNE8 have a 53-residue deletion, which was assigned a role in substrate (UDP-GlcNAc) binding. Deletion of this fragment likely eliminates epimerase enzymatic activity. Our findings imply that GNE is subject to evolutionary mechanisms to improve cellular functions, without increasing the number of genes. Our expression and modeling data contribute to elucidation of the complex functional and regulatory mechanisms of human GNE and may contribute to further elucidating the pathology and treatment strategies of the human GNE-opathies sialuria and hereditary inclusion body myopathy.

Indexed as

Amino Acid SequenceCarbohydrate EpimerasesCatalysisCatalytic DomainDNA, ComplementaryGene DeletionHumansModels, MolecularMolecular Sequence DataN-Acetylneuraminic AcidPolymerase Chain ReactionProtein IsoformsSequence Homology, Amino AcidTissue DistributionCarbohydrate EpimerasesDNA, ComplementaryN-Acetylneuraminic AcidProtein IsoformsUDP acetylglucosamine-2-epimerase

Identifiers

PMID21910480
PMCPMC3192532
OpenAlexW1982303469

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.