Evidence map›Paper›PMID 21909390›Full record

ArticlePloS one2011

Molecular insights into reprogramming-initiation events mediated by the OSKM gene regulatory network.

Nancy Mah, Ying Wang, Mei-Chih Liao, Alessandro Prigione, Justyna Jozefczuk, Björn Lichtner, Katharina Wolfrum, Manuela Haltmeier, Max Flöttmann, Martin Schaefer and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed, 1 pooled it
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 1 synthesis or guideline pooled it, 69 citations in OpenAlex.

  1. Pluripotent stem cells: induction and self-renewal.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Energy Metabolism Regulates Stem Cell Pluripotency.Frontiers in cell and developmental biology · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Mechanisms of the Metabolic Shift during Somatic Cell Reprogramming.International journal of molecular sciences · 2019
    Review
  15. Article
  16. Article
  17. Effects of the Extracts from Fruit and Stem ofJournal of clinical medicine · 2018
    Article
  18. Review
  19. Pharmacological Regulation of Oxidative Stress in Stem Cells.Oxidative medicine and cellular longevity · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Nancy MahComputational Biology and Data Mining Group, Max Delbrück Center for Molecular Medicine, Berlin, Germany.
Ying Wang
Mei-Chih Liao
Alessandro Prigione
Justyna Jozefczuk
Björn Lichtner
Katharina Wolfrum
Manuela Haltmeier
Max Flöttmann
Martin Schaefer
Alexander Hahn
Ralf Mrowka
Edda Klipp
Miguel A Andrade-Navarro
James Adjaye
Max Planck Institute for Molecular Genetics · DEMax Delbrück Center · DEHumboldt-Universität zu Berlin · DESoftware (Germany) · DEFriedrich Schiller University Jena · DEKing Saud University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic cells can be reprogrammed to induced pluripotent stem cells by over-expression of OCT4, SOX2, KLF4 and c-MYC (OSKM). With the aim of unveiling the early mechanisms underlying the induction of pluripotency, we have analyzed transcriptional profiles at 24, 48 and 72 hours post-transduction of OSKM into human foreskin fibroblasts. Experiments confirmed that upon viral transduction, the immediate response is innate immunity, which induces free radical generation, oxidative DNA damage, p53 activation, senescence, and apoptosis, ultimately leading to a reduction in the reprogramming efficiency. Conversely, nucleofection of OSKM plasmids does not elicit the same cellular stress, suggesting viral response as an early reprogramming roadblock. Additional initiation events include the activation of surface markers associated with pluripotency and the suppression of epithelial-to-mesenchymal transition. Furthermore, reconstruction of an OSKM interaction network highlights intermediate path nodes as candidates for improvement intervention. Overall, the results suggest three strategies to improve reprogramming efficiency employing: 1) anti-inflammatory modulation of innate immune response, 2) pre-selection of cells expressing pluripotency-associated surface antigens, 3) activation of specific interaction paths that amplify the pluripotency signal.

Indexed as

AnimalsCellular ReprogrammingCellular SenescenceEpithelial-Mesenchymal TransitionFibroblastsGene Expression RegulationGene Regulatory NetworksHumansKruppel-Like Factor 4Kruppel-Like Transcription FactorsMaleMiceModels, BiologicalOctamer Transcription Factor-3Pluripotent Stem CellsProto-Oncogene Proteins c-mycKLF4 protein, humanKlf4 protein, mouseKruppel-Like Factor 4Kruppel-Like Transcription FactorsOctamer Transcription Factor-3Proto-Oncogene Proteins c-mycRNA, MessengerSOXB1 Transcription FactorsTumor Suppressor Protein p53

Identifiers

PMID21909390
PMCPMC3164204
OpenAlexW2110094870

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.