Evidence map›Paper›PMID 21909353›Full record

ArticlePloS one2011

Testing the FMR1 promoter for mosaicism in DNA methylation among CpG sites, strands, and cells in FMR1-expressing males with fragile X syndrome.

Reinhard Stöger, Diane P Genereux, Randi J Hagerman, Paul J Hagerman, Flora Tassone, Charles D Laird

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Personalized Follow Up and Genetic Diagnosis Update ofInternational journal of molecular sciences · 2025
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  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Human pluripotent stem cell models of Fragile X syndrome.Molecular and cellular neurosciences · 2016
    Review
  16. Article
  17. Emerging pharmacologic treatment options for fragile X syndrome.The application of clinical genetics · 2015
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Reinhard StögerDepartment of Biology, University of Washington, Seattle, Washington, United States of America. reinhard.stoger@nottingham.ac.uk
Diane P Genereux
Randi J Hagerman
Paul J Hagerman
Flora Tassone
Charles D Laird
University of Washington · USUniversity of California, Davis · USUniversity of California Davis Medical Center · US

Funding

Restoring FMRP Phenotypes Frpm Temporal Regional and Splice- Isoforms VarationsP30HD002274 · NICHD · UNIVERSITY OF WASHINGTON · PI GURALNICK, MICHAEL J · 1985 to 2013
$33.6M
INTERDISCIPLINARY TRAINING IN GENOMIC SCIENCEST32HG000035 · NHGRI · UNIVERSITY OF WASHINGTON · PI Bruce Colston Trapnell · 1995 to 2026
$24.2M
Shotgun Hairpin-Bisulfite PCR Reveals Genome Methylation and Sequence VariationR01GM077464 · NIGMS · UNIVERSITY OF WASHINGTON · PI LAIRD, CHARLES D · 2006 to 2008
$773k
NHGRI NIH HHS T32 HG000035NHGRI NIH HHS T32 HG 00035NICHD NIH HHS HD002274NICHD NIH HHS P30 HD002274NIGMS NIH HHS GM077464NIGMS NIH HHS R01 GM077464
6 · The paper itself

Abstract

Variability among individuals in the severity of fragile X syndrome (FXS) is influenced by epigenetic methylation mosaicism, which may also be common in other complex disorders. The epigenetic signal of dense promoter DNA methylation is usually associated with gene silencing, as was initially reported for FMR1 alleles in individuals with FXS. A paradox arose when significant levels of FMR1 mRNA were reported for some males with FXS who had been reported to have predominately methylated alleles. We have used hairpin-bisufite PCR, validated with molecular batch-stamps and barcodes, to collect and assess double-stranded DNA methylation patterns from these previously studied males. These patterns enable us to distinguish among three possible forms of methylation mosaicism, any one of which could explain FMR1 expression in these males. Our data indicate that cryptic inter-cell mosaicism in DNA methylation can account for the presence of FMR1 mRNA in some individuals with FXS.

Indexed as

MosaicismPromoter Regions, GeneticAllelesBase SequenceCase-Control StudiesCpG IslandsCytosineDNADNA MethylationFemaleFragile X Messenger Ribonucleoprotein 1Fragile X SyndromeHumansMaleMolecular Sequence DataMutationCytosineDNAFragile X Messenger Ribonucleoprotein 1

Identifiers

PMID21909353
PMCPMC3166088
OpenAlexW2113643368

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.