ArticleIEEE nanotechnology magazine2009
Modeling Transport Through Synthetic Nanopores.
Article in IEEE nanotechnology magazine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Fluids and Electrolytes under Confinement in Single-Digit Nanopores.Chemical reviews · 2023Review
- Scalable molecular dynamics on CPU and GPU architectures with NAMD.The Journal of chemical physics · 2020Article
- Resistive amplitude fingerprints during translocation of linear molecules through charged solid-state nanopores.The Journal of chemical physics · 2020Article
- Boron nitride nanotubes as containers for targeted drug delivery of doxorubicin.Journal of molecular modeling · 2020Article
- Adsorption and Diffusion of Cisplatin Molecules in Nanoporous Materials: A Molecular Dynamics Study.Biomolecules · 2019Article
- Rapid and Accurate Determination of Nanopore Ionic Current Using a Steric Exclusion Model.ACS sensors · 2019Article
- Water-Compression Gating of Nanopore Transport.Physical review letters · 2018Article
- Modulation of Molecular Flux Using a Graphene Nanopore Capacitor.The journal of physical chemistry. B · 2017Article
- Graphene Nanopores for Protein Sequencing.Advanced functional materials · 2016Article
- Numerical investigation of molecular nano-array in potential-energy profile for a single dsDNA.The European physical journal. E, Soft matter · 2016Article
- Slowing DNA Transport Using Graphene-DNA Interactions.Advanced functional materials · 2015Article
- Conformational transitions and stop-and-go nanopore transport of single-stranded DNA on charged graphene.Nature communications · 2014Article
- Microsecond simulations of DNA and ion transport in nanopores with novel ion-ion and ion-nucleotides effective potentials.Journal of computational chemistry · 2014Article
- Slowing down single-molecule trafficking through a protein nanopore reveals intermediates for peptide translocation.Scientific reports · 2014Article
- Structure and response to flow of the glycocalyx layer.Biophysical journal · 2014Article
- Ion transport through a graphene nanopore.Nanotechnology · 2012Article
- Modeling Pressure-Driven Transport of Proteins through a Nanochannel.IEEE transactions on nanotechnology · 2011Article
- Computational microscopy of the role of protonable surface residues in nanoprecipitation oscillations.ACS nano · 2010Article
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Corrections and comments
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Authors and funding
5 authors.
Funding
Abstract
Nanopores in thin synthetic membranes have emerged as convenient tools for high-throughput single-molecule manipulation and analysis. Because of their small sizes and their ability to selectively transport solutes through otherwise impermeable membranes, nanopores have numerous potential applications in nanobiotechnology. For most applications, properties of the nanopore systems have to be characterize at the atomic level, which is currently beyond the limit of experimental methods. Molecular dynamics (MD) simulations can provide the desired information, however several technical challenges have to be met before this method can be applied to synthetic nanopore systems. Here, we highlight our recent work on modeling synthetic nanopores of the most common types. First, we describe a novel graphical tool for setting up all-atom systems incorporating inorganic materials and biomolecules. Next, we illustrate the application of the MD method for silica, silicon nitride, and polyethylene terephthalate nanopores. Following that, we describe a method for modeling synthetic surfaces using a bias potential. Future directions for tool development and nanopore modeling are briefly discussed at the end of this article.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.