Evidence map›Paper›PMID 21909262›Full record

ArticlePLoS pathogens2011

Envelope deglycosylation enhances antigenicity of HIV-1 gp41 epitopes for both broad neutralizing antibodies and their unmutated ancestor antibodies.

Ben-Jiang Ma, S Munir Alam, Eden P Go, Xiaozhi Lu, Heather Desaire, Georgia D Tomaras, Cindy Bowman, Laura L Sutherland, Richard M Scearce, Sampa Santra and 4 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 90 citations in OpenAlex.

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  16. HIV Vaccination: A Roadmap among Advancements and Concerns.International journal of molecular sciences · 2018
    Review
  17. Article
  18. Review
  19. HIV-1 Consensus Envelope-Induced Broadly Binding Antibodies.AIDS research and human retroviruses · 2017
    Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Ben-Jiang MaDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, United States of America.
S Munir Alam
Eden P Go
Xiaozhi Lu
Heather Desaire
Georgia D Tomaras
Cindy Bowman
Laura L Sutherland
Richard M Scearce
Sampa Santra
Norman L Letvin
Thomas B Kepler
Hua-Xin Liao
Barton F Haynes
Duke University · USUniversity of Kansas · USBeth Israel Deaconess Medical Center · USHarvard University · US

Funding

Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI CRUMP, JOHN ANDREW · 2006 to 2011
$290.5M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Social and Behavioral Sciences CoreP30AI064518 · NIAID · DUKE UNIVERSITY · PI Nwora Lance Okeke · 2005 to 2026
$50.5M
Regional Biocontainment Laboratory (RBL)UC6AI058607 · NIAID · DUKE UNIVERSITY · PI WILLIAMS, R SANDERS · 2003 to 2005
$16.3M
Duke University Center for Translational ResearchP30AI051445 · NIAID · DUKE UNIVERSITY · PI FROTHINGHAM, RICHARD · 2002 to 2006
$8.1M
NCRR FACSARIA CELL SORTER: LUNGS10RR019145 · NCRR · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2004 to 2004
$435k
NCRR NIH HHS S10 RR019145NIAID NIH HHS AI051445NIAID NIH HHS AI64518NIAID NIH HHS P30 AI051445NIAID NIH HHS P30 AI060354NIAID NIH HHS P30 AI064518NIAID NIH HHS U19 AI067854NIAID NIH HHS UC6 AI058607
6 · The paper itself

Abstract

The HIV-1 gp41 envelope (Env) membrane proximal external region (MPER) is an important vaccine target that in rare subjects can elicit neutralizing antibodies. One mechanism proposed for rarity of MPER neutralizing antibody generation is lack of reverted unmutated ancestor (putative naive B cell receptor) antibody reactivity with HIV-1 envelope. We have studied the effect of partial deglycosylation under non-denaturing (native) conditions on gp140 Env antigenicity for MPER neutralizing antibodies and their reverted unmutated ancestor antibodies. We found that native deglycosylation of clade B JRFL gp140 as well as group M consensus gp140 Env CON-S selectively increased the reactivity of Env with the broad neutralizing human mAbs, 2F5 and 4E10. Whereas fully glycosylated gp140 Env either did not bind (JRFL), or weakly bound (CON-S), 2F5 and 4E10 reverted unmutated ancestors, natively deglycosylated JRFL and CON-S gp140 Envs did bind well to these putative mimics of naive B cell receptors. These data predict that partially deglycoslated Env would bind better than fully glycosylated Env to gp41-specific naïve B cells with improved immunogenicity. In this regard, immunization of rhesus macaques demonstrated enhanced immunogenicity of the 2F5 MPER epitope on deglyosylated JRFL gp140 compared to glycosylated JRFL gp140. Thus, the lack of 2F5 and 4E10 reverted unmutated ancestor binding to gp140 Env may not always be due to lack of unmutated ancestor antibody reactivity with gp41 peptide epitopes, but rather, may be due to glycan interference of binding of unmutated ancestor antibodies of broad neutralizing mAb to Env gp41.

Indexed as

AnimalsAntibodies, MonoclonalAntibodies, NeutralizingB-Lymphocytesenv Gene Products, Human Immunodeficiency VirusEpitopesGlycosylationHIV-1HIV Envelope Protein gp41HumansMacaca mulattaPeptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine AmidaseAntibodies, MonoclonalAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusEpitopesgp140 envelope protein, Human immunodeficiency virus 1HIV Envelope Protein gp41Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase

Identifiers

PMID21909262
PMCPMC3164629
OpenAlexW2077494233

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.