Evidence map›Paper›PMID 21909239›Full record

ArticlePLoS biology2011

A blind circadian clock in cavefish reveals that opsins mediate peripheral clock photoreception.

Nicola Cavallari, Elena Frigato, Daniela Vallone, Nadine Fröhlich, Jose Fernando Lopez-Olmeda, Augusto Foà, Roberto Berti, Francisco Javier Sánchez-Vázquez, Cristiano Bertolucci, Nicholas S Foulkes

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 239 citations in OpenAlex.

  1. Bioinformatic Analysis and Tissue-Specific Expression of Clock Genes andAnimals : an open access journal from MDPI · 2026
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  9. Is there direct photoentrainment in the goldfish liver? Wavelength-dependent regulation of clock genes and investigation of the opsin 7 family.Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology · 2025
    Article
  10. Postprandial Sleep in Short-Sleeping Mexican Cavefish.Journal of experimental zoology. Part A, Ecological and integrative physiology · 2024
    Article
  11. Article
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  13. Ontogeny and social context regulate the circadian activity patterns of Lake Malawi cichlids.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2024
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  14. Review
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46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Nicola CavallariDepartment of Biology and Evolution, University of Ferrara, Ferrara, Italy.
Elena Frigato
Daniela Vallone
Nadine Fröhlich
Jose Fernando Lopez-Olmeda
Augusto Foà
Roberto Berti
Francisco Javier Sánchez-Vázquez
Cristiano Bertolucci
Nicholas S Foulkes
Karlsruhe Institute of Technology · DEUniversity of Ferrara · ITUniversidad de Murcia · ESUniversity of Florence · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The circadian clock is synchronized with the day-night cycle primarily by light. Fish represent fascinating models for deciphering the light input pathway to the vertebrate clock since fish cell clocks are regulated by direct light exposure. Here we have performed a comparative, functional analysis of the circadian clock involving the zebrafish that is normally exposed to the day-night cycle and a cavefish species that has evolved in perpetual darkness. Our results reveal that the cavefish retains a food-entrainable clock that oscillates with an infradian period. Importantly, however, this clock is not regulated by light. This comparative study pinpoints the two extra-retinal photoreceptors Melanopsin (Opn4m2) and TMT-opsin as essential upstream elements of the peripheral clock light input pathway.

Indexed as

AnimalsCell LineCircadian ClocksCircadian RhythmFeeding BehaviorGene ExpressionMelanopsinOpsinsPhotic StimulationPhotoreceptor Cells, VertebrateRod OpsinsZebrafishMelanopsinOpsinsRod Opsins

Identifiers

PMID21909239
PMCPMC3167789
OpenAlexW2091148368

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.