Evidence map›Paper›PMID 21909114›Full record

ArticleNature2011

Frequent pathway mutations of splicing machinery in myelodysplasia.

Kenichi Yoshida, Masashi Sanada, Yuichi Shiraishi, Daniel Nowak, Yasunobu Nagata, Ryo Yamamoto, Yusuke Sato, Aiko Sato-Otsubo, Ayana Kon, Masao Nagasaki and 22 more

3 registry-linked trialsAbstract read
PubMed Publisher
In one paragraph

Article in Nature, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 1,220 papers.

0numbers the graph read from it
0cells of the map it votes in
1,220citing papers in PubMed
66.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02459743 unknown statusnot on this mapstarted 2015, after this paper: background citation

Molecular Disease Profile of Haematological Malignancies. A Prospective Registry Study by the Rete Ematologica Lombarda (REL) Clinical Network

Typeobservational_patient_registrySponsorUniversity of PaviaRan2015 to 2018Enrolled1,000ConditionsHematological Malignancies
NCT03907553 completednot on this map

Aging of Hematopoietic Stem Cells - Molecular Architecture of Marrow Dysplasia and Clinical Contribution of Ineffective Hematopoiesis to Frailty in the Elderly

TypeobservationalSponsorIstituto Clinico HumanitasRan2003Enrolled5,000ConditionsAnemia, Clonal HematopoiesisArmstargeted genome sequencing
NCT04889729 unknown statusnot on this mapstarted 2021, after this paper: background citation

Genomic and Personalized Medicine for All (GENOMED4ALL): Application of Artificial Intelligence to Improve Disease Classification and Prognosis in Myelodysplastic Syndrome.

TypeobservationalSponsorIstituto Clinico HumanitasRan2021 to 2024Enrolled13,284ConditionsMyelodysplastic Syndromes
3 · Its place in the literature

Who cites it

1,220 citing papers in PubMed, 2,044 citations in OpenAlex.

  1. Trial
  2. Article
  3. TargetingGenes & development · 2026
    Article
  4. Review
  5. RNA splicing in health and disease.Molecular biomedicine · 2026
    Review
  6. DecipheringGenes · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. U2af1Leukemia · 2026
    Article
  14. Splicing-driven post-translational dysregulation: a new frontier for precision cancer medicine and immunotherapy.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  15. Review
  16. Article
  17. Molecular and therapeutic frontiers in anemia therapy.The Journal of clinical investigation · 2026
    Review
  18. Article
  19. Article
  20. Article

1,160 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 10 institutions in 5 countries.

Kenichi YoshidaCancer Genomics Project, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan.
Masashi Sanada
Yuichi Shiraishi
Daniel Nowak
Yasunobu Nagata
Ryo Yamamoto
Yusuke Sato
Aiko Sato-Otsubo
Ayana Kon
Masao Nagasaki
George Chalkidis
Yutaka Suzuki
Masashi Shiosaka
Ryoichiro Kawahata
Tomoyuki Yamaguchi
Makoto Otsu
Naoshi Obara
Mamiko Sakata-Yanagimoto
Ken Ishiyama
Hiraku Mori
Florian Nolte
Wolf-Karsten Hofmann
Shuichi Miyawaki
Sumio Sugano
Claudia Haferlach
H Phillip Koeffler
Lee-Yung Shih
Torsten Haferlach
Shigeru Chiba
Hiromitsu Nakauchi
Satoru Miyano
Seishi Ogawa
The University of Tokyo · JPUniversity of Tsukuba · JPJapan Science and Technology Agency · JPMunich Leukemia Laboratory (Germany) · DETokyo Metropolitan Ohtsuka Hospital · JPUniversity Medical Centre Mannheim · DECedars-Sinai Medical Center · USChang Gung Memorial Hospital · TWHeidelberg University · DEShowa University Fujigaoka Hospital · JP

Funding

REGULATION OF HEMATOPOIETIC CYTOKINESR01CA026038 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KOEFFLER, HAROLD PHILLIP · 1985 to 2013
$4.7M
NCI NIH HHS R01 CA026038
6 · The paper itself

Abstract

Myelodysplastic syndromes and related disorders (myelodysplasia) are a heterogeneous group of myeloid neoplasms showing deregulated blood cell production with evidence of myeloid dysplasia and a predisposition to acute myeloid leukaemia, whose pathogenesis is only incompletely understood. Here we report whole-exome sequencing of 29 myelodysplasia specimens, which unexpectedly revealed novel pathway mutations involving multiple components of the RNA splicing machinery, including U2AF35, ZRSR2, SRSF2 and SF3B1. In a large series analysis, these splicing pathway mutations were frequent (∼45 to ∼85%) in, and highly specific to, myeloid neoplasms showing features of myelodysplasia. Conspicuously, most of the mutations, which occurred in a mutually exclusive manner, affected genes involved in the 3'-splice site recognition during pre-mRNA processing, inducing abnormal RNA splicing and compromised haematopoiesis. Our results provide the first evidence indicating that genetic alterations of the major splicing components could be involved in human pathogenesis, also implicating a novel therapeutic possibility for myelodysplasia.

Indexed as

Alternative SplicingExomeHematopoiesisHumansMutationMyelodysplastic SyndromesNuclear ProteinsPolymorphism, Single NucleotideRibonucleoproteinsRNA Splice SitesRNA SplicingSpliceosomesSplicing Factor U2AFNuclear ProteinsRibonucleoproteinsRNA Splice SitesSplicing Factor U2AFU2AF1 protein, human

Identifiers

PMID21909114
OpenAlexW2073889874

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.