Evidence map›Paper›PMID 21909093›Full record

ArticleNature structural & molecular biology2011

Protonation of key acidic residues is critical for the K⁺-selectivity of the Na/K pump.

Haibo Yu, Ian M Ratheal, Pablo Artigas, Benoît Roux

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Multistate Kinetic Model of the Sodium-Potassium ATPase.The journal of physical chemistry. B · 2025
    Article
  5. Specific protonation of acidic residues confers KThe Journal of biological chemistry · 2024
    Article
  6. Ion channel selectivity through ion-modulated changes of selectivity filter pProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Protein pJournal of chemical theory and computation · 2022
    Article
  8. Prediction of protein pChemical science · 2022
    Article
  9. Allosteric gate modulation confers KThe EMBO journal · 2019
    Article
  10. A single KeLife · 2019
    Article
  11. Cholesterol depletion inhibits NaThe Journal of biological chemistry · 2019
    Article
  12. Distinct pH dependencies of NaThe Journal of biological chemistry · 2018
    Article
  13. Article
  14. Article
  15. Ion channels and ion selectivity.Essays in biochemistry · 2017
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Haibo YuDepartment of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois, USA.
Ian M Ratheal
Pablo Artigas
Benoît Roux

Funding

Computational Studies of Ion Channels - Resubmission 01R01GM062342 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2001 to 2022
$8.7M
NIGMS NIH HHS GM062342NIGMS NIH HHS R01 GM062342
6 · The paper itself

Abstract

The sodium-potassium (Na/K) pump is a P-type ATPase that generates Na(+) and K(+) concentration gradients across the cell membrane. For each hydrolyzed ATP molecule, the pump extrudes three Na(+) and imports two K(+) by alternating between outward- and inward-facing conformations that preferentially bind K(+) or Na(+), respectively. Remarkably, the selective K(+) and Na(+) binding sites share several residues, and how the pump is able to achieve the selectivity required for the functional cycle is unclear. Here, free energy-perturbation molecular dynamics (FEP/MD) simulations based on the crystal structures of the Na/K pump in a K(+)-loaded state (E2·P(i)) reveal that protonation of the high-field acidic side chains involved in the binding sites is crucial to achieving the proper K(+) selectivity. This prediction is tested with electrophysiological experiments showing that the selectivity of the E2P state for K(+) over Na(+) is affected by extracellular pH.

Indexed as

AcidsBinding SitesCrystallography, X-RayHydrogen-Ion ConcentrationMolecular Dynamics SimulationMutagenesis, Site-DirectedPotassiumProtonsSodium-Potassium-Exchanging ATPaseAcidsPotassiumProtonsSodium-Potassium-Exchanging ATPase

Identifiers

PMID21909093
PMCPMC3190665

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.