Evidence map›Paper›PMID 21908669›Full record

ArticleJournal of bacteriology2011

Identification and functional analysis of CT069 as a novel transcriptional regulator in Chlamydia.

Johnny C Akers, HoangMinh HoDac, Richard H Lathrop, Ming Tan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. The Repressor Function of theJournal of bacteriology · 2020
    Article
  10. Structure and Metal Binding Properties ofJournal of bacteriology · 2019
    Article
  11. Article
  12. Ironing Out the Unconventional Mechanisms of Iron Acquisition and Gene Regulation inFrontiers in cellular and infection microbiology · 2017
    Review
  13. Following the Footsteps of Chlamydial Gene Regulation.Molecular biology and evolution · 2015
    Article
  14. Manganese uptake and streptococcal virulence.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2015
    Review
  15. Article
  16. Chlamydia trachomatis protein GrgA activates transcription by contacting the nonconserved region of σ66.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Cleavage of a putative metal permease in Chlamydia trachomatis yields an iron-dependent transcriptional repressor.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Johnny C AkersDepartment of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697-4025, USA.
HoangMinh HoDac
Richard H Lathrop
Ming Tan
University of California, Irvine · US

Funding

Biomedical Informatics Training ProgramT15LM007443 · NLM · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALDI, PIERRE · 2002 to 2012
$9.3M
The Regulation of gene expression in ChlamydiaR01AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 1999 to 2021
$7.1M
Molecular mechanisms of gene regulation in ChlamydiaK02AI057563 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2004 to 2008
$474k
Mechanisms of temporal gene regulation in ChlamydiaR56AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2010 to 2010
$383k
NIAID NIH HHS AI 057563NIAID NIH HHS AI 44198NIAID NIH HHS K02 AI057563NIAID NIH HHS R01 AI044198NIAID NIH HHS R56 AI044198NLM NIH HHS LM007443NLM NIH HHS T15 LM007443
6 · The paper itself

Abstract

Only a small number of transcription factors have been predicted in Chlamydia spp., which are obligate intracellular bacteria that include a number of important human pathogens. We used a bioinformatics strategy to identify novel transcriptional regulators from the Chlamydia trachomatis genome by predicting proteins with the general structure and characteristic functional domains of a bacterial transcription factor. With this approach, we identified CT069 as a candidate transcription factor with sequence similarity at its C terminus to Treponema pallidum TroR. Like TroR, the gene for CT069 belongs to an operon that encodes components of a putative ABC transporter for importing divalent metal cations. However, CT069 has been annotated as YtgC because of sequence similarity at its N terminus to TroC, a transmembrane component of this metal ion transporter. Instead, CT069 appears to be a fusion protein composed of YtgC and a TroR ortholog that we have called YtgR. Although it has not been previously reported, a similar YtgC-YtgR fusion protein is predicted to be encoded by other Chlamydia spp. and several other bacteria, including Bacillus subtilis. We show that recombinant YtgR polypeptide bound specifically to an operator sequence upstream of the ytg operon and that binding was enhanced by Zn(2+). We also demonstrate that YtgR repressed transcription from the ytg promoter in a heterologous in vivo reporter assay. These results provide evidence that CT069 is a negative regulator of the ytg operon, which encodes a putative metal ion transporter in C. trachomatis.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial ProteinsBase SequenceChlamydia trachomatisMolecular Sequence DataOperonPromoter Regions, GeneticProtein BindingRepressor ProteinsSequence AlignmentBacterial ProteinsRepressor Proteins

Identifiers

PMID21908669
PMCPMC3209234
OpenAlexW2113678588

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.