Evidence map›Paper›PMID 21908611›Full record

ArticleThe Journal of biological chemistry2011

Binding of the cyclophilin 40 ortholog SQUINT to Hsp90 protein is required for SQUINT function in Arabidopsis.

Keith W Earley, R Scott Poethig

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 69 citations in OpenAlex.

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  8. MAC5, an RNA-binding protein, protects pri-miRNAs from SERRATE-dependent exoribonuclease activities.Proceedings of the National Academy of Sciences of the United States of America · 2020
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  18. Messages on small RNA duplexes in plants.Journal of plant research · 2017
    Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Keith W EarleyDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104.
R Scott PoethigDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104. Electronic address: spoethig@sas.upenn.edu.
University of Pennsylvania · US

Funding

Regulation of a developmental clock in ArabidopsisR01GM051893 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI POETHIG, RICHARD SCOTT · 1995 to 2024
$7.0M
Temporal Regulation of miR156F32GM084591 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EARLEY, KEITH WILLIAM · 2008 to 2010
$121k
NIGMS NIH HHS F32 GM084591NIGMS NIH HHS F32GM084591NIGMS NIH HHS R01GM05189NIGMS NIH HHS R01 GM051893
6 · The paper itself

Abstract

SQN (SQUINT) is the Arabidopsis ortholog of the immunophilin CyP40 (cyclophilin 40) and promotes microRNA activity by promoting the activity of AGO1. In animals and Saccharomyces cerevisiae, CyP40 promotes protein activity in association with the protein chaperone Hsp90. To determine whether CyP40 also acts in association with Hsp90 in plants, we examined the interaction between SQN and Hsp90 in vitro and tested the importance of this interaction for the function of SQN in planta. We found that SQN interacts with cytoplasmic Hsp90 proteins but not with Hsp90 proteins localized to chloroplasts, mitochondria, or the endoplasmic reticulum. The interaction between SQN and Hsp90 in vitro requires the MEEVD domain of Hsp90, as well as several conserved amino acids within the tetratricopeptide repeat domain of SQN. Amino acid substitutions that disrupt the interaction between SQN and Hsp90 in vitro also impair the activity of SQN in planta. Our results indicate that the interaction between CyP40 and Hsp90 is conserved in plants and that this interaction is essential for the function of CyP40.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsArgonaute ProteinsBlotting, WesternCyclophilinsEscherichia coliGene SilencingHSP90 Heat-Shock ProteinsImmunoprecipitationMicroRNAsMolecular Sequence DataPeptidyl-Prolyl Isomerase FPhenotypeSequence Homology, Amino AcidAGO1 protein, ArabidopsisArabidopsis ProteinsArgonaute ProteinsCyclophilinsHSP90 Heat-Shock ProteinsMicroRNAsPeptidyl-Prolyl Isomerase FSQN protein, Arabidopsis

Identifiers

PMID21908611
PMCPMC3207435
OpenAlexW2047937385

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.