Evidence map›Paper›PMID 21908515›Full record

ArticleHuman molecular genetics2011

Genome-wide association study identifies breast cancer risk variant at 10q21.2: results from the Asia Breast Cancer Consortium.

Qiuyin Cai, Jirong Long, Wei Lu, Shimian Qu, Wanqing Wen, Daehee Kang, Ji-Young Lee, Kexin Chen, Hongbing Shen, Chen-Yang Shen and 45 more

Abstract read
In one paragraph

Article in Human molecular genetics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Trial
  6. Observational
  7. Potential Role of Zinc Finger 365Iranian journal of medical sciences · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Rare Coding Variants Associated with Breast Cancer.Advances in experimental medicine and biology · 2021
    Article
  12. Breast Cancer-Related Low Penetrance Genes.Advances in experimental medicine and biology · 2021
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Genome-Wide Association Studies of Cancer in Diverse Populations.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2018
    Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

55 authors.

Qiuyin CaiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt University School of Medicine, Nashville, TN 37203-1738, USA.
Jirong Long
Wei Lu
Shimian Qu
Wanqing Wen
Daehee Kang
Ji-Young Lee
Kexin Chen
Hongbing Shen
Chen-Yang Shen
Hyuna Sung
Keitaro Matsuo
Christopher A Haiman
Ui Soon Khoo
Zefang Ren
Motoki Iwasaki
Kai Gu
Yong-Bing Xiang
Ji-Yeob Choi
Sue K Park
Lina Zhang
Zhibin Hu
Pei-Ei Wu
Dong-Young Noh
Kazuo Tajima
Brian E Henderson
Kelvin Y K Chan
Fengxi Su
Yoshio Kasuga
Wenjing Wang
Jia-Rong Cheng
Keun-Young Yoo
Jong-Young Lee
Hong Zheng
Yao Liu
Ya-Lan Shieh
Sung-Won Kim
Jong Won Lee
Hiroji Iwata
Loic Le Marchand
Sum Yin Chan
Xiaoming Xie
Shoichiro Tsugane
Min Hyuk Lee
Shenming Wang
Guoliang Li
Shawn Levy
Bo Huang
Jiajun Shi
Ryan Delahanty
Ying Zheng
Chun Li
Yu-Tang Gao
Xiao-Ou Shu
Wei Zheng

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jin Chen · 1995 to 2026
$172.8M
GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSR01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2001 to 2005
$23.2M
Multiethnic Cohort Study of Diet and CancerR37CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 2003 to 2012
$23.2M
Shanghai Breast Cancer StudyR01CA064277 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 1996 to 2012
$4.8M
Cancer Risk Reduction and Diet: A Cohort Study of WomenR37CA070867 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ZHENG, WEI · 2009 to 2013
$4.7M
MULTIETHNIC/MINORITY COHORT STUDY OF DIET AND CANCERR01CA054281 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI KOLONEL, LAURENCE N. · 1993 to 2002
$4.5M
The Nashville Breast Health StudyR01CA100374 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 2004 to 2009
$4.2M
MOLECULAR EPIDEMIOLOGIC STUDY OF BREAST CANCERR01CA090899 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 2000 to 2009
$3.5M
Consortium Study to Identify Breast Cancer Susceptibility LociR01CA148667 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI LONG, JIRONG, ZHENG, WEI · 2011 to 2015
$3.3M
Genetic Factors for Breast Cancer- A genome Wide StudyR01CA124558 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 2008 to 2012
$3.1M
Breast Cancer Survival: Lifestyle and Genetic DeterminantsR01CA118229 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 2007 to 2010
$2.9M
Soyfood, Gene Polymorphisms and Endometrial Cancer RiskR01CA092585 · NCI · VANDERBILT UNIVERSITY · PI SHU, XIAO-OU · 2001 to 2010
$2.3M
Intramural NIH HHS Z01 BC011118NCI NIH HHS CA054281NCI NIH HHS CA063464NCI NIH HHS CA132839NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA054281NCI NIH HHS R01 CA063464NCI NIH HHS R01 CA064277NCI NIH HHS R01CA064277NCI NIH HHS R01 CA090899NCI NIH HHS R01CA090899NCI NIH HHS R01 CA092585NCI NIH HHS R01CA092585NCI NIH HHS R01 CA100374NCI NIH HHS R01CA100374NCI NIH HHS R01 CA118229NCI NIH HHS R01CA118229NCI NIH HHS R01 CA122756NCI NIH HHS R01CA122756NCI NIH HHS R01 CA124558NCI NIH HHS R01CA124558NCI NIH HHS R01 CA132839NCI NIH HHS R01 CA148667NCI NIH HHS R37 CA054281NCI NIH HHS R37 CA070867NCI NIH HHS R37CA070867NCI NIH HHS U01 CA063464
6 · The paper itself

Abstract

Although approximately 20 common genetic susceptibility loci have been identified for breast cancer risk through genome-wide association studies (GWASs), genetic risk variants reported to date explain only a small fraction of heritability for this common cancer. We conducted a four-stage GWAS including 17 153 cases and 16 943 controls among East-Asian women to search for new genetic risk factors for breast cancer. After analyzing 684 457 SNPs in 2062 cases and 2066 controls (Stage I), we selected for replication among 5969 Chinese women (4146 cases and 1823 controls) the top 49 SNPs that had neither been reported previously nor were in strong linkage disequilibrium with reported SNPs (Stage II). Three SNPs were further evaluated in up to 13 152 Chinese and Japanese women (6436 cases and 6716 controls) (Stage III). Finally, two SNPs were evaluated in 10 847 Korean women (4509 cases and 6338 controls) (Stage IV). SNP rs10822013 on chromosome 10q21.2, located in the zinc finger protein 365 (ZNF365) gene, showed a consistent association with breast cancer risk in all four stages with a combined per-risk allele odds ratio of 1.10 (95% CI: 1.07-1.14) (P-value for trend = 5.87 × 10(-9)). In vitro electrophoretic mobility shift assays demonstrated the potential functional significance of rs10822013. Our results strongly implicate rs10822013 at 10q21.2 as a genetic risk variant for breast cancer among East-Asian women.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAdultAgedAllelesAsiaBreast NeoplasmsCell Line, TumorChromosomes, Human, Pair 10FemaleHumansMenopauseMiddle AgedOdds RatioPolymorphism, Single Nucleotide

Identifiers

PMID21908515
PMCPMC3221542

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.