Evidence map›Paper›PMID 21908407›Full record

ArticleNucleic acids research2012

Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4.

Justin D Walter, Margaret Hunter, Melanie Cobb, Geoff Traeger, P Clint Spiegel

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
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  8. Hibernating ribosomes as drug targets?Frontiers in microbiology · 2024
    Review
  9. Article
  10. Ribosome-targeting antibiotics and resistanceRSC medicinal chemistry · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Justin D WalterDepartment of Chemistry, Western Washington University, 516 High Street, MS 9150, Bellingham, WA 98225-9150, USA.
Margaret Hunter
Melanie Cobb
Geoff Traeger
P Clint Spiegel
Western Washington University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thiostrepton, a macrocyclic thiopeptide antibiotic, inhibits prokaryotic translation by interfering with the function of elongation factor G (EF-G). Here, we have used 70S ribosome binding and GTP hydrolysis assays to study the effects of thiostrepton on EF-G and a newly described translation factor, elongation factor 4 (EF4). In the presence of thiostrepton, ribosome-dependent GTP hydrolysis is inhibited for both EF-G and EF4, with IC(50) values equivalent to the 70S ribosome concentration (0.15 µM). Further studies indicate the mode of thiostrepton inhibition is to abrogate the stable binding of EF-G and EF4 to the 70S ribosome. In support of this model, an EF-G truncation variant that does not possess domains IV and V was shown to possess ribosome-dependent GTP hydrolysis activity that was not affected by the presence of thiostrepton (>100 µM). Lastly, chemical footprinting was employed to examine the nature of ribosome interaction and tRNA movements associated with EF4. In the presence of non-hydrolyzable GTP, EF4 showed chemical protections similar to EF-G and stabilized a ratcheted state of the 70S ribosome. These data support the model that thiostrepton inhibits stable GTPase binding to 70S ribosomal complexes, and a model for the first step of EF4-catalyzed reverse-translocation is presented.

Indexed as

Anti-Bacterial AgentsEnzyme ActivationEnzyme InhibitorsEscherichia coli ProteinsGuanosine TriphosphateMutationPeptide Elongation Factor GPeptide Initiation FactorsProtein Synthesis InhibitorsRibosomesRNA, Ribosomal, 23SThiostreptonTranscriptional Elongation FactorsAnti-Bacterial AgentsEnzyme InhibitorsEscherichia coli ProteinsGDPNP compoundGuanosine TriphosphateLepA protein, E coliPeptide Elongation Factor GPeptide Initiation FactorsProtein Synthesis InhibitorsRNA, Ribosomal, 23SThiostreptonTranscriptional Elongation Factors

Identifiers

PMID21908407
PMCPMC3245911
OpenAlexW1988531363

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.