Evidence map›Paper›PMID 21904058›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2011

BrabA.11339.a: anomalous diffraction and ligand binding guide towards the elucidation of the function of a 'putative β-lactamase-like protein' from Brucella melitensis.

Jan Abendroth, Banumathi Sankaran, Thomas E Edwards, Anna S Gardberg, Shellie Dieterich, Janhavi Bhandari, Alberto J Napuli, Wesley C Van Voorhis, Bart L Staker, Peter J Myler and 1 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Automated identification of crystallographic ligands using sparse-density representations.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Jan AbendrothSeattle Structural Genomics Center for Infectious Disease (SSGCID), USA. jabendroth@embios.com
Banumathi Sankaran
Thomas E Edwards
Anna S Gardberg
Shellie Dieterich
Janhavi Bhandari
Alberto J Napuli
Wesley C Van Voorhis
Bart L Staker
Peter J Myler
Lance J Stewart

Funding

Howard Hughes Medical InstituteNIAID NIH HHS HHSN272200700057C
6 · The paper itself

Abstract

The crystal structure of a β-lactamase-like protein from Brucella melitensis was initially solved by SAD phasing from an in-house data set collected on a crystal soaked with iodide. A high-resolution data set was collected at a synchroton at the Se edge wavelength, which also provided an independent source of phasing using a small anomalous signal from metal ions in the active site. Comparisons of anomalous peak heights at various wavelengths allowed the identification of the active-site metal ions as manganese. In the native data set a partially occupied GMP could be identified. When co-crystallized with AMPPNP or GMPPNP, clear density for the hydrolyzed analogs was observed, providing hints to the function of the protein.

Indexed as

beta-LactamasesBrucella melitensisCrystallography, X-RayLigandsModels, MolecularProtein Structure, QuaternaryStructural Homology, Proteinbeta-LactamasesLigands

Identifiers

PMID21904058
PMCPMC3169410

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.