Evidence map›Paper›PMID 21904032›Full record

ArticleActa crystallographica. Section D, Biological crystallography2011

Dark progression reveals slow timescales for radiation damage between T = 180 and 240 K.

Matthew Warkentin, Ryan Badeau, Jesse Hopkins, Robert E Thorne

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Damage-limited resolution for X-ray and electron microscopy of organic specimens.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Radiation-driven rotational motion of nanoparticles.Journal of synchrotron radiation · 2018
    Article
  9. Article
  10. Article
  11. Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  12. Article
  13. Exploiting fast detectors to enter a new dimension in room-temperature crystallography.Acta crystallographica. Section D, Biological crystallography · 2014
    Article
  14. Article
  15. Kinetic modeling of the X-ray-induced damage to a metalloprotein.The journal of physical chemistry. B · 2013
    Article
  16. Article
  17. Article
  18. Micro-crystallography comes of age.Current opinion in structural biology · 2012
    Review
  19. Spatial distribution of radiation damage to crystalline proteins at 25-300 K.Acta crystallographica. Section D, Biological crystallography · 2012
    Article
  20. Outrunning free radicals in room-temperature macromolecular crystallography.Acta crystallographica. Section D, Biological crystallography · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Matthew WarkentinPhysics Department, Cornell University, Ithaca, NY 14853, USA.
Ryan Badeau
Jesse Hopkins
Robert E Thorne

Funding

ZINC FINGER-DNA COMPLEXP41RR001646 · NCRR · CORNELL UNIVERSITY ITHACA · PI CINGOLANI, GINO · 1985 to 2011
$23.8M
New Approaches to Radiation Damage and CryoprotectionR01GM065981 · NIGMS · CORNELL UNIVERSITY ITHACA · PI THORNE, ROBERT E. · 2002 to 2010
$1.8M
NCRR NIH HHS P41 RR001646NCRR NIH HHS RR-01646NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM065981-05 A1NIGMS NIH HHS R01 GM065981
6 · The paper itself

Abstract

Can radiation damage to protein crystals be `outrun' by collecting a structural data set before damage is manifested? Recent experiments using ultra-intense pulses from a free-electron laser show that the answer is yes. Here, evidence is presented that significant reductions in global damage at temperatures above 200 K may be possible using conventional X-ray sources and current or soon-to-be available detectors. Specifically, `dark progression' (an increase in damage with time after the X-rays have been turned off) was observed at temperatures between 180 and 240 K and on timescales from 200 to 1200 s. This allowed estimation of the temperature-dependent timescale for damage. The rate of dark progression is consistent with an Arrhenius law with an activation energy of 14 kJ mol(-1). This is comparable to the activation energy for the solvent-coupled diffusive damage processes responsible for the rapid increase in radiation sensitivity as crystals are warmed above the glass transition near 200 K. Analysis suggests that at T = 300 K data-collection times of the order of 1 s (and longer at lower temperatures) may allow significant reductions in global radiation damage, facilitating structure solution on crystals with liquid solvent. No dark progression was observed below T = 180 K, indicating that no important damage process is slowed through this timescale window in this temperature range.

Indexed as

Crystallography, X-RayProteinsTemperatureProteins

Identifiers

PMID21904032
PMCPMC3169314

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.