Evidence map›Paper›PMID 21903814›Full record

ArticleScience (New York, N.Y.)2011

Chromosome organization by a nucleoid-associated protein in live bacteria.

Wenqin Wang, Gene-Wei Li, Chongyi Chen, X Sunney Xie, Xiaowei Zhuang

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 209 papers.

0numbers the graph read from it
0cells of the map it votes in
209citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

209 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Structural and Binding Properties of Dps - A Nucleoid Associated Protein.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Macromolecular interactions and geometrical confinement determine the 3D diffusion of ribosome-sized particles in liveProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

149 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Wenqin WangDepartment of Physics, Harvard University, Cambridge, MA 02138, USA.
Gene-Wei Li
Chongyi Chen
X Sunney Xie
Xiaowei Zhuang

Funding

Dynamic cellular architecture of bacteria by system-wide super-resolution imagingR01GM096450 · NIGMS · HARVARD UNIVERSITY · PI XIE, XIAOLIANG SUNNEY, ZHUANG, XIAOWEI · 2010 to 2014
$3.7M
Howard Hughes Medical InstituteNIGMS NIH HHS GM 096450NIGMS NIH HHS R01 GM096450
6 · The paper itself

Abstract

Bacterial chromosomes are confined in submicrometer-sized nucleoids. Chromosome organization is facilitated by nucleoid-associated proteins (NAPs), but the mechanisms of action remain elusive. In this work, we used super-resolution fluorescence microscopy, in combination with a chromosome-conformation capture assay, to study the distributions of major NAPs in live Escherichia coli cells. Four NAPs--HU, Fis, IHF, and StpA--were largely scattered throughout the nucleoid. In contrast, H-NS, a global transcriptional silencer, formed two compact clusters per chromosome, driven by oligomerization of DNA-bound H-NS through interactions mediated by the amino-terminal domain of the protein. H-NS sequestered the regulated operons into these clusters and juxtaposed numerous DNA segments broadly distributed throughout the chromosome. Deleting H-NS led to substantial chromosome reorganization. These observations demonstrate that H-NS plays a key role in global chromosome organization in bacteria.

Indexed as

Binding SitesCell DivisionChromosomes, BacterialDNA, BacterialDNA-Binding ProteinsEscherichia coli K12Escherichia coli ProteinsFactor For Inversion Stimulation ProteinFimbriae ProteinsGene Expression Regulation, BacterialGenetic LociGenome, BacterialIntegration Host FactorsMolecular ChaperonesNucleic Acid ConformationOperonDNA, BacterialDNA-Binding ProteinsEscherichia coli ProteinsFactor For Inversion Stimulation ProteinFimbriae ProteinsFimG protein, E coliFis protein, E colihns protein, E coliintegration host factor, E coliIntegration Host FactorsMolecular ChaperonesRecombinant Fusion ProteinsRepressor ProteinsStpA protein, E coli

Identifiers

PMID21903814
PMCPMC3329943

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.