Evidence map›Paper›PMID 21901789›Full record

ArticleHuman mutation2011

Whole-exome sequencing identifies ALMS1, IQCB1, CNGA3, and MYO7A mutations in patients with Leber congenital amaurosis.

Xia Wang, Hui Wang, Ming Cao, Zhe Li, Xianfeng Chen, Claire Patenia, Athurva Gore, Emad B Abboud, Ali A Al-Rajhi, Richard A Lewis and 6 more

Abstract read
In one paragraph

Article in Human mutation, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
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  7. PrevalentGenes · 2021
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  15. Hypomorphic mutations identified in the candidate Leber congenital amaurosis gene CLUAP1.Genetics in medicine : official journal of the American College of Medical Genetics · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Xia WangDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Hui Wang
Ming Cao
Zhe Li
Xianfeng Chen
Claire Patenia
Athurva Gore
Emad B Abboud
Ali A Al-Rajhi
Richard A Lewis
James R Lupski
Graeme Mardon
Kun Zhang
Donna Muzny
Richard A Gibbs
Rui Chen
Baylor College of Medicine · USBaylor Genetics · USKing Khaled Eye Specialist Hospital · SAMolina Center for Energy and the Environment · USTexas Children's Hospital · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
GENETICS OF EARLY ONSET RETINAL DISEASESR01EY018571 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI RUI CHEN · 2008 to 2026
$7.2M
Molecular Mechanisms of Human Retinal DiseaseR01EY020540 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI, MARDON, GRAEME · 2011 to 2017
$2.3M
FGI: Acquisition of an Illumina Genome Analyzer System for Functional Genomic ResS10RR026550 · NCRR · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2010 to 2010
$500k
Functional study of a novel gene involved in human retinal diseaseF32EY019430 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WANG, HUI · 2009 to 2011
$157k
NCRR NIH HHS S10 RR026550NEI NIH HHS F32 EY019430NEI NIH HHS F32EY19430NEI NIH HHS R01 EY018571NEI NIH HHS R01EY018571NEI NIH HHS R01 EY020540NHGRI NIH HHS U54 HG003273
6 · The paper itself

Abstract

It has been well documented that mutations in the same retinal disease gene can result in different clinical phenotypes due to difference in the mutant allele and/or genetic background. To evaluate this, a set of consanguineous patient families with Leber congenital amaurosis (LCA) that do not carry mutations in known LCA disease genes was characterized through homozygosity mapping followed by targeted exon/whole-exome sequencing to identify genetic variations. Among these families, a total of five putative disease-causing mutations, including four novel alleles, were found for six families. These five mutations are located in four genes, ALMS1, IQCB1, CNGA3, and MYO7A. Therefore, in our LCA collection from Saudi Arabia, three of the 37 unassigned families carry mutations in retinal disease genes ALMS1, CNGA3, and MYO7A, which have not been previously associated with LCA, and 3 of the 37 carry novel mutations in IQCB1, which has been recently associated with LCA. Together with other reports, our results emphasize that the molecular heterogeneity underlying LCA, and likely other retinal diseases, may be highly complex. Thus, to obtain accurate diagnosis and gain a complete picture of the disease, it is essential to sequence a larger set of retinal disease genes and combine the clinical phenotype with molecular diagnosis.

Indexed as

MutationCalmodulin-Binding ProteinsCell Cycle ProteinsChild, PreschoolChromosome MappingConsanguinityCyclic Nucleotide-Gated Cation ChannelsDNA Mutational AnalysisExomeFamilyHomozygoteHumansLeber Congenital AmaurosisMyosinsMyosin VIIaPedigreeALMS1 protein, humanCalmodulin-Binding ProteinsCell Cycle ProteinsCNGA3 protein, humanCyclic Nucleotide-Gated Cation ChannelsIQCB1 protein, humanMYO7A protein, humanMyosinsMyosin VIIaProteins

Identifiers

PMID21901789
PMCPMC3943164
OpenAlexW1990722633

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.