ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed.
- Pyramiding QTLs for durable sheath blight resistance in the popular rice variety 'Maudamani'.Scientific reports · 2026Article
- Advances in breeding, biotechnology, and nanotechnological approaches to combat sheath blight disease in rice.Molecular biology reports · 2024Review
- Molecular Mapping and Transfer of Quantitative Trait Loci (QTL) for Sheath Blight Resistance from Wild RiceGenes · 2024Article
- Article
- Genetic Characterization of the Partial Disease Resistance of Rice to Bacterial Panicle Blight and Sheath Blight by Combined QTL Linkage and QTL-seq Analyses.Plants (Basel, Switzerland) · 2023Article
- "KRiShI": a manually curated knowledgebase on rice sheath blight disease.Functional & integrative genomics · 2022Article
- Comparative transcriptome analysis of rice cultivars resistant and susceptible to Rhizoctonia solani AG1-IA.BMC genomics · 2022Article
- Article
- Identification of alkali-tolerant candidate genes using the NGS-assisted BSA strategy in rice.Molecular breeding : new strategies in plant improvement · 2021Article
- Identification of virulence associated milRNAs and their bidirectional targets in Rhizoctonia solani and maize during infection.BMC plant biology · 2021Article
- Construction of a SNP Fingerprinting Database and Population Genetic Analysis of Cigar Tobacco Germplasm Resources in China.Frontiers in plant science · 2021Article
- Understanding sheath blight resistance in rice: the road behind and the road ahead.Plant biotechnology journal · 2020Review
- Rice Stress-Resistant SNP Database.Rice (New York, N.Y.) · 2019Article
- Pectin induced transcriptome of a Rhizoctonia solani strain causing sheath blight disease in rice reveals insights on key genes and RNAi machinery for development of pathogen derived resistance.Plant molecular biology · 2019Article
- Development of sequence-based markers for seed protein content in pigeonpea.Molecular genetics and genomics : MGG · 2019Article
- Exploring natural variation for rice sheath blight resistance inPlant signaling & behavior · 2019Article
- Comparison of gene co-networks reveals the molecular mechanisms of the rice (Oryza sativa L.) response to Rhizoctonia solani AG1 IA infection.Functional & integrative genomics · 2018Article
- Identification of a molecular marker tightly linked to bacterial wilt resistance in tomato by genome-wide SNP analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene, RpsHC18, in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Fine Mapping and Identification of a Novel Phytophthora Root Rot Resistance LocusFrontiers in plant science · 2018Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent advances in whole genome sequencing (WGS) have allowed identification of genes for disease susceptibility in humans. The objective of our research was to exploit whole genome sequences of 13 rice (Oryza sativa L.) inbred lines to identify non-synonymous SNPs (nsSNPs) and candidate genes for resistance to sheath blight, a disease of worldwide significance. WGS by the Illumina GA IIx platform produced an average 5× coverage with ~700 K variants detected per line when compared to the Nipponbare reference genome. Two filtering strategies were developed to identify nsSNPs between two groups of known resistant and susceptible lines. A total of 333 nsSNPs detected in the resistant lines were absent in the susceptible group. Selected variants associated with resistance were found in 11 of 12 chromosomes. More than 200 genes with selected nsSNPs were assigned to 42 categories based on gene family/gene ontology. Several candidate genes belonged to families reported in previous studies, and three new regions with novel candidates were also identified. A subset of 24 nsSNPs detected in 23 genes was selected for further study. Individual alleles of the 24 nsSNPs were evaluated by PCR whose presence or absence corresponded to known resistant or susceptible phenotypes of nine additional lines. Sanger sequencing confirmed presence of 12 selected nsSNPs in two lines. "Resistant" nsSNP alleles were detected in two accessions of O. nivara that suggests sources for resistance occur in additional Oryza sp. Results from this study provide a foundation for future basic research and marker-assisted breeding of rice for sheath blight resistance.
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