ArticleAntonie van Leeuwenhoek2012
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential.
Article in Antonie van Leeuwenhoek, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 34 citations in OpenAlex.
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- Association of Broiler Litter Microbiome Composition andFrontiers in veterinary science · 2021Article
- Inoculation With a Microbe Isolated From the Negev Desert Enhances Corn Growth.Frontiers in microbiology · 2020Article
- Oxidative damage induced by HWorld journal of microbiology & biotechnology · 2019Article
- Low-AbundanceBioMed research international · 2019Article
- Complete Genome Sequence ofGenome announcements · 2018Article
- In silico engineering ofPeerJ · 2018Article
- Comparison of the Vitek MS and Bruker Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Systems for Identification of Rhodococcus equi and Dietzia spp.Journal of clinical microbiology · 2017Article
- Regulation of the Alkane Hydroxylase CYP153 Gene in a Gram-Positive Alkane-Degrading Bacterium, Dietzia sp. Strain DQ12-45-1b.Applied and environmental microbiology · 2016Article
- Arsenic release from shallow aquifers of the Hetao basin, Inner Mongolia: evidence from bacterial community in aquifer sediments and groundwater.Ecotoxicology (London, England) · 2014Article
- Cloning, expression and characterization of a versatile Baeyer-Villiger monooxygenase from Dietzia sp. D5.AMB Express · 2014Article
- Transcriptional profiling of genes involved in n-hexadecane compounds assimilation in the hydrocarbon degrading Dietzia cinnamea P4 strain.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2013Article
- First isolation of Dietzia cinnamea from a dog bite wound in an adult patient.Journal of clinical microbiology · 2012Article
- Draft genome analysis of Dietzia sp. 111N12-1, isolated from the South China Sea with bioremediation activity.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]Article
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Authors and funding
10 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The draft genome of Dietzia cinnamea strain P4 was determined using pyrosequencing. In total, 428 supercontigs were obtained and analyzed. We here describe and interpret the main features of the draft genome. The genome contained a total of 3,555,295 bp, arranged in a single replicon with an average G+C percentage of 70.9%. It revealed the presence of complete pathways for basically all central metabolic routes. Also present were complete sets of genes for the glyoxalate and reductive carboxylate cycles. Autotrophic growth was suggested to occur by the presence of genes for aerobic CO oxidation, formate/formaldehyde oxidation, the reverse tricarboxylic acid cycle and the 3-hydropropionate cycle for CO(2) fixation. Secondary metabolism was evidenced by the presence of genes for the biosynthesis of terpene compounds, frenolicin, nanaomycin and avilamycin A antibiotics. Furthermore, a probable role in azinomycin B synthesis, an important product with antitumor activity, was indicated. The complete alk operon for the degradation of n-alkanes was found to be present, as were clusters of genes for biphenyl ring dihydroxylation. This study brings new insights in the genetics and physiology of D. cinnamea P4, which is useful in biotechnology and bioremediation.
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