Evidence map›Paper›PMID 21901088›Full record

ArticlePLoS pathogens2011

The plant pathogen Pseudomonas syringae pv. tomato is genetically monomorphic and under strong selection to evade tomato immunity.

Rongman Cai, James Lewis, Shuangchun Yan, Haijie Liu, Christopher R Clarke, Francesco Campanile, Nalvo F Almeida, David J Studholme, Magdalen Lindeberg, David Schneider and 9 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
24.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed, 232 citations in OpenAlex.

  1. Genome Evolution in Plant Pathogenic Bacteria.Genome biology and evolution · 2026
    Review
  2. Review
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  4. Revisiting race 1 ofJournal of bacteriology · 2026
    Review
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  7. Article
  8. Review
  9. Article
  10. Natural variation of immune epitopes reveals intrabacterial antagonism.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Review
  13. Frontiers in plant science · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Contrasting patterns of microbial dominance in theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Article
  20. Review

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 9 institutions in 5 countries.

Rongman CaiDepartment of Plant Pathology, Physiology, and Weed Science, Virginia Tech, Blacksburg, Virginia, United States of America.
James Lewis
Shuangchun Yan
Haijie Liu
Christopher R Clarke
Francesco Campanile
Nalvo F Almeida
David J Studholme
Magdalen Lindeberg
David Schneider
Massimo Zaccardelli
Joao C Setubal
Nadia P Morales-Lizcano
Adriana Bernal
Gitta Coaker
Christy Baker
Carol L Bender
Scotland Leman
Boris A Vinatzer
Virginia Tech · USCentro di Ricerca per l’Orticoltura · ITOklahoma State University · USUniversidad de Los Andes · COCornell University · USIthaca College · USUniversidade Federal de Mato Grosso do Sul · BRUniversity of California, Davis · USUniversity of Exeter · GB

Funding

Training Program in Systems Biology of DevelopmentT32HD060555 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2009 to 2013
$1.3M
NICHD NIH HHS T32 HD060555
6 · The paper itself

Abstract

Recently, genome sequencing of many isolates of genetically monomorphic bacterial human pathogens has given new insights into pathogen microevolution and phylogeography. Here, we report a genome-based micro-evolutionary study of a bacterial plant pathogen, Pseudomonas syringae pv. tomato. Only 267 mutations were identified between five sequenced isolates in 3,543,009 nt of analyzed genome sequence, which suggests a recent evolutionary origin of this pathogen. Further analysis with genome-derived markers of 89 world-wide isolates showed that several genotypes exist in North America and in Europe indicating frequent pathogen movement between these world regions. Genome-derived markers and molecular analyses of key pathogen loci important for virulence and motility both suggest ongoing adaptation to the tomato host. A mutational hotspot was found in the type III-secreted effector gene hopM1. These mutations abolish the cell death triggering activity of the full-length protein indicating strong selection for loss of function of this effector, which was previously considered a virulence factor. Two non-synonymous mutations in the flagellin-encoding gene fliC allowed identifying a new microbe associated molecular pattern (MAMP) in a region distinct from the known MAMP flg22. Interestingly, the ancestral allele of this MAMP induces a stronger tomato immune response than the derived alleles. The ancestral allele has largely disappeared from today's Pto populations suggesting that flagellin-triggered immunity limits pathogen fitness even in highly virulent pathogens. An additional non-synonymous mutation was identified in flg22 in South American isolates. Therefore, MAMPs are more variable than expected differing even between otherwise almost identical isolates of the same pathogen strain.

Indexed as

Host-Pathogen InteractionsAllelesDNA PrimersEuropeFlagellinGene Expression Regulation, PlantGenetic LociGenetic MarkersMutationNorth AmericaPhylogeographyPlant DiseasesPlant ImmunityPlant LeavesPolymorphism, Single NucleotidePseudomonas syringaeDNA PrimersFlagellinGenetic MarkersVirulence Factors

Identifiers

PMID21901088
PMCPMC3161960
OpenAlexW1991831546

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.