Evidence map›Paper›PMID 21900241›Full record

ArticleThe Journal of biological chemistry2011

Mechanism of proton transfer in [FeFe]-hydrogenase from Clostridium pasteurianum.

Adam J Cornish, Katrin Gärtner, Hui Yang, John W Peters, Eric L Hegg

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Structural determinants of oxygen resistance and ZnProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Outer-sphere effects on the OChemical science · 2024
    Review
  8. Accessing a synthetic FeChemical science · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Vibrational Perturbation of the [FeFe] Hydrogenase H-Cluster Revealed byJournal of the American Chemical Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Adam J CornishDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319.
Katrin GärtnerDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319.
Hui YangDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319.
John W PetersDepartment of Chemistry and Biochemistry and Astrobiology Biogeocatalysis Research Center, Montana State University, Bozeman, Montana 59717.
Eric L HeggDepartment of Biochemistry and Molecular Biology, Michigan State University, East Lansing, Michigan 48824-1319. Electronic address: erichegg@msu.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

[FeFe]-Hydrogenases are complex metalloproteins that catalyze the reversible reduction of protons to molecular hydrogen utilizing a unique diiron subcluster bridged to a [4Fe4S] subcluster. Extensive studies have concentrated on the nature and catalytic activity of the active site, yet relatively little information is available concerning the mechanism of proton transport that is required for this activity. Previously, structural characterization of [FeFe]-hydrogenase from Clostridium pasteurianum indicated a potential proton transport pathway involving four residues (Cys-299, Glu-279, Ser-319, and Glu-282) that connect the active site to the enzyme surface. Here, we demonstrate that substitution of any of these residues resulted in a drastic reduction in hydrogenase activity relative to the native enzyme, supporting the importance of these residues in catalysis. Inhibition studies of native and amino acid-substituted enzymes revealed that Zn(2+) specifically blocked proton transfer by binding to Glu-282, confirming the role of this residue in the identified pathway. In addition, all four of these residues are strictly conserved, suggesting that they may form a proton transport pathway that is common to all [FeFe]-hydrogenases.

Indexed as

Amino Acid SequenceBiological TransportCatalysisClostridiumGlutamic AcidHydrogenaseIronIron-Sulfur ProteinsKineticsMolecular ConformationMolecular Sequence DataMutagenesis, Site-DirectedProtonsSequence Homology, Amino AcidZincGlutamic AcidHydrogenaseIronIron-Sulfur ProteinsProtonsZinc

Identifiers

PMID21900241
PMCPMC3207428

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.