Evidence map›Paper›PMID 21899290›Full record

ArticleACS nano2011

Evolution and protein packaging of small-molecule RNA aptamers.

Jolene L Lau, Michael M Baksh, Jason D Fiedler, Steven D Brown, Amanda Kussrow, Darryl J Bornhop, Phillip Ordoukhanian, M G Finn

Abstract read
In one paragraph

Article in ACS nano, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

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  5. Molecular Engineering ofMolecules (Basel, Switzerland) · 2023
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  6. Review
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  9. An experimental check of backscattering interferometry.Sensors and actuators. B, Chemical · 2017
    Article
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  11. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jolene L LauDepartment of Chemistry and The Skaggs Institute for Chemical Biology, The Scripps Research Institute, La Jolla, California 92037, United States.
Michael M Baksh
Jason D Fiedler
Steven D Brown
Amanda Kussrow
Darryl J Bornhop
Phillip Ordoukhanian
M G Finn
Scripps Research Institute · USVanderbilt University · US

Funding

Chemistry-Biology Interface Training GrantT32GM065086 · NIGMS · VANDERBILT UNIVERSITY · PI BACHMANN, BRIAN O, SULIKOWSKI, GARY ALLEN · 2002 to 2022
$7.0M
MOLECULAR BASIS OF VIRAL PATHOGENESIST32AI007354 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI DE LA TORRE, JUAN C. · 1989 to 2020
$5.2M
Molecular Modulation of Virus Capsid AssemblyR01AI067417 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI ZLOTNICK, ADAM · 2006 to 2015
$4.0M
Electron Dense Labels for Macromolecular ImagingR01RR021886 · NCRR · SCRIPPS RESEARCH INSTITUTE, THE · PI FINN, M.G. · 2005 to 2009
$1.8M
Interferometric Nano-sensing for Biochemical AnalysisR01EB003537 · NIBIB · VANDERBILT UNIVERSITY · PI BORNHOP, DARRYL J. · 2005 to 2008
$891k
NCRR NIH HHS R01 RR021886NCRR NIH HHS RR021886NIAID NIH HHS AI067417NIAID NIH HHS R01 AI067417NIAID NIH HHS T32 AI007354NIAID NIH HHS T32AI007354NIBIB NIH HHS EB003537NIBIB NIH HHS R01 EB003537NIGMS NIH HHS T32 GM065086
6 · The paper itself

Abstract

A high-affinity RNA aptamer (K(d) = 50 nM) was efficiently identified by SELEX against a heteroaryldihydropyrimidine structure, chosen as a representative drug-like molecule with no cross reactivity with mammalian or bacterial cells. This aptamer, its weaker-binding variants, and a known aptamer against theophylline were each embedded in a longer RNA sequence that was encapsidated inside a virus-like particle by a convenient expression technique. These nucleoprotein particles were shown by backscattering interferometry to bind to the small-molecule ligands with affinities similar to those of the free (nonencapsidated) aptamers. The system therefore comprises a general approach to the production and sequestration of functional RNA molecules, characterized by a convenient label-free analytical technique.

Indexed as

AllolevivirusAptamers, NucleotideBase SequenceCapsid ProteinsInverted Repeat SequencesLigandsMolecular Sequence DataPyrimidinesSELEX Aptamer TechniqueAptamers, NucleotideCapsid ProteinsLigandsPyrimidines

Identifiers

PMID21899290
PMCPMC3209476
OpenAlexW1992311913

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.