Evidence map›Paper›PMID 21896739›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Second-generation high-throughput forward genetic screen in mice to isolate subtle behavioral mutants.

Vivek Kumar, Kyungin Kim, Chryshanthi Joseph, Lisa C Thomas, Heekyung Hong, Joseph S Takahashi

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.0field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
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  5. Machine vision based frailty assessment for genetically diverse mice.bioRxiv : the preprint server for biology · 2024
    Article
  6. Article
  7. Article
  8. Visual detection of seizures in mice using supervised machine learning.bioRxiv : the preprint server for biology · 2024
    Article
  9. The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Forward genetic approach for behavioral neuroscience using animal models.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. I Believe I Can Fly!: Use of Drosophila as a Model Organism in Neuropsychopharmacology Research.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2016
    Review
  18. Article
  19. Article
  20. Systematic profiling of Caenorhabditis elegans locomotive behaviors reveals additional components in G-protein Gαq signaling.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Vivek KumarDepartment of Neuroscience, Howard Hughes Medical Institute, University of Texas Southwestern Medical Center, Dallas, TX 75390-9111, USA.
Kyungin Kim
Chryshanthi Joseph
Lisa C Thomas
Heekyung Hong
Joseph S Takahashi
Howard Hughes Medical Institute · USSouthwestern Medical Center · US

Funding

Characterization & Cloning of the Response Psychostimulant Mutant Gridlock'dF32DA024556 · NIDA · UT SOUTHWESTERN MEDICAL CENTER · PI KUMAR, VIVEK · 2008 to 2010
$166k
Howard Hughes Medical InstituteNIDA NIH HHS 1F32DA024556NIDA NIH HHS F32 DA024556
6 · The paper itself

Abstract

Forward genetic screens have been highly successful in revealing roles of genes and pathways in complex biological events. Traditionally these screens have focused on isolating mutants with the greatest phenotypic deviance, with the hopes of discovering genes that are central to the biological event being investigated. Behavioral screens in mice typically use simple activity-based assays as endophenotypes for more complex emotional states of the animal. They generally set the selection threshold for a putative mutant at 3 SDs (z score of 3) from the average behavior of normal animals to minimize false-positive results. Behavioral screens using a high threshold for detection have generally had limited success, with high false-positive rates and subtle phenotypic differences that have made mapping and cloning difficult. In addition, targeted reverse genetic approaches have shown that when genes central to behaviors such as open field behavior, psychostimulant response, and learning and memory tasks are mutated, they produce subtle phenotypes that differ from wild-type animals by 1 to 2 SDs (z scores of 1 to 2). We have conducted a second-generation (G2) dominant N-ethyl-N-nitrosourea (ENU) screen especially designed to detect subtle behavioral mutants for open field activity and psychostimulant response behaviors. We successfully detect mutant lines with only 1 to 2 SD shifts in mean response compared with wild-type control animals and present a robust statistical and methodological framework for conducting such forward genetic screens. Using this methodology we have screened 229 ENU mutant lines and have identified 15 heritable mutant lines. We conclude that for screens in mice that use activity-based endophenotypic measurements for complex behavioral states, this G2 screening approach yields better results.

Indexed as

AnimalsBehavior, AnimalBreedingCluster AnalysisGenetic TestingHigh-Throughput Screening AssaysInheritance PatternsMiceMice, Inbred C57BLMice, Mutant StrainsMutationPhenotypeQuantitative Trait, Heritable

Identifiers

PMID21896739
PMCPMC3176609
OpenAlexW2056787619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.