Evidence map›Paper›PMID 21896738›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2011

Modulatory profiling identifies mechanisms of small molecule-induced cell death.

Adam J Wolpaw, Kenichi Shimada, Rachid Skouta, Matthew E Welsch, Uri David Akavia, Dana Pe'er, Fatima Shaik, J Chloe Bulinski, Brent R Stockwell

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed.

  1. Review
  2. Review
  3. The promising arsenal of ferroptosis inducers in bladder cancer.Journal of molecular medicine (Berlin, Germany) · 2025
    Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Ferroptosis and cuproptposis in kidney Diseases: dysfunction of cell metabolism.Apoptosis : an international journal on programmed cell death · 2024
    Review
  12. Review
  13. Review
  14. IPAntioxidants (Basel, Switzerland) · 2024
    Article
  15. Article
  16. Article
  17. Ferroptosis: mechanisms and advances in ocular diseases.Molecular and cellular biochemistry · 2023
    Review
  18. Review
  19. Article
  20. Review

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Adam J WolpawDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Kenichi Shimada
Rachid Skouta
Matthew E Welsch
Uri David Akavia
Dana Pe'er
Fatima Shaik
J Chloe Bulinski
Brent R Stockwell

Funding

Chemical Genetic Profiling of Engineered Tumor CellsR01CA097061 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI STOCKWELL, BRENT R. · 2002 to 2016
$4.8M
Systems Biology of Tumor Progression and Drug-ResistanceRC2CA148308 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2009 to 2010
$4.8M
Direct Chemical Activators of CaspasesR01CA136779 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WELLS, JAMES A · 2009 to 2013
$1.5M
Defining a novel trigger for apoptosisR01GM085081 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI STOCKWELL, BRENT R. · 2008 to 2011
$1.5M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA097061NCI NIH HHS R01CA097061NCI NIH HHS R01 CA136779NCI NIH HHS RC2 CA148308NCI NIH HHS RC2CA148308NIGMS NIH HHS R01 GM085081NIGMS NIH HHS R01GM085081
6 · The paper itself

Abstract

Cell death is a complex process that plays a vital role in development, homeostasis, and disease. Our understanding of and ability to control cell death is impeded by an incomplete characterization of the full range of cell death processes that occur in mammalian systems, especially in response to exogenous perturbations. We present here a general approach to address this problem, which we call modulatory profiling. Modulatory profiles are composed of the changes in potency and efficacy of lethal compounds produced by a second cell death-modulating agent in human cell lines. We show that compounds with the same characterized mechanism of action have similar modulatory profiles. Furthermore, clustering of modulatory profiles revealed relationships not evident when clustering lethal compounds based on gene expression profiles alone. Finally, modulatory profiling of compounds correctly predicted three previously uncharacterized compounds to be microtubule-destabilizing agents, classified numerous compounds that act nonspecifically, and identified compounds that cause cell death through a mechanism that is morphologically and biochemically distinct from previously established ones.

Indexed as

bcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinCell DeathCell LineHumansMicrotubulesSignal TransductionBAK1 protein, humanbcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer Protein

Identifiers

PMID21896738
PMCPMC3182736

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.