Evidence map›Paper›PMID 21895338›Full record

ArticleJournal of biomedical optics2011

Genetically encoded ratiometric biosensors to measure intracellular exchangeable zinc in Escherichia coli.

Da Wang, Tamiika K Hurst, Richard B Thompson, Carol A Fierke

Open access · bronzeAbstract read
In one paragraph

Article in Journal of biomedical optics, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  4. Metal retention and replacement in QueD2 protect queuosine-tRNA biosynthesis in metal-starvedProceedings of the National Academy of Sciences of the United States of America · 2022
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  10. Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
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  12. Review
  13. Article
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  19. Kinetics and thermodynamics of metal-binding to histone deacetylase 8.Protein science : a publication of the Protein Society · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Da WangUniversity of Michigan, Department of Chemistry, Ann Arbor, Michigan 48109, USA. wangda@umich.edu
Tamiika K Hurst
Richard B Thompson
Carol A Fierke
Michigan United · USMichigan Medicine · USUniversity of Maryland, Baltimore · US

Funding

Zinc Fluorescence Biosensing and Imaging TechnologyR01EB003924 · NIBIB · UNIVERSITY OF MARYLAND BALTIMORE · PI THOMPSON, RICHARD BLAIR · 2004 to 2010
$2.3M
NIBIB NIH HHS R01 EB003924
6 · The paper itself

Abstract

Zinc is an essential element for numerous cellular processes, therefore zinc homeostasis is regulated in living organisms. Fluorescent sensors have been developed as important tools to monitor the concentrations of readily exchangeable zinc in live cells. One type of biosensor uses carbonic anhydrase (CA) as the recognition element based on its tunable affinity, superior metal selectivity, and fluorescence signal from aryl sulfonamide ligands coupled to zinc binding. Here, we fuse carbonic anhydrase with a red fluorescent protein to create a series of genetically-encoded Förster resonance energy transfer-based excitation ratiometric zinc sensors that exhibit large signal increases in response to alterations in physiological-free zinc concentrations. These sensors were applied to the prokaryotic model organism Escherichia coli to quantify the readily exchangeable zinc concentration. In minimal media, E. coli BL21(DE3) cells expressing the CA sensor, exhibit a median intracellular readily exchangeable zinc concentration of 20 pM, much less than the total cellular zinc concentration of ∼0.2 mM. Furthermore, the intracellular readily exchangeable zinc concentration varies with the concentration of environmental zinc.

Indexed as

Biosensing TechniquesCarbonic AnhydrasesEscherichia coliFluorescence Resonance Energy TransferLuminescent ProteinsModels, BiologicalMolecular BiologyRed Fluorescent ProteinZincCarbonic AnhydrasesLuminescent ProteinsRed Fluorescent ProteinZinc

Identifiers

PMID21895338
PMCPMC3166341
OpenAlexW2166439062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.