Evidence map›Paper›PMID 21894191›Full record

ArticleCell research2011

Specific lectin biomarkers for isolation of human pluripotent stem cells identified through array-based glycomic analysis.

Yu-Chieh Wang, Masato Nakagawa, Ibon Garitaonandia, Ileana Slavin, Gulsah Altun, Robert M Lacharite, Kristopher L Nazor, Ha T Tran, Candace L Lynch, Trevor R Leonardo and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Cell research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Optimizing Generation of Stem Cell-Derived Islet Cells.Stem cell reviews and reports · 2022
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. GABAergic System Dysfunction and Challenges in Schizophrenia Research.Frontiers in cell and developmental biology · 2021
    Review
  13. Review
  14. Article
  15. Cell-Based Therapeutic Approaches for Cystic Fibrosis.International journal of molecular sciences · 2020
    Review
  16. Prevention of tumor risk associated with the reprogramming of human pluripotent stem cells.Journal of experimental & clinical cancer research : CR · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Yu-Chieh WangThe Scripps Research Institute, Department of Chemical Physiology, La Jolla, CA 92037, USA.
Masato Nakagawa
Ibon Garitaonandia
Ileana Slavin
Gulsah Altun
Robert M Lacharite
Kristopher L Nazor
Ha T Tran
Candace L Lynch
Trevor R Leonardo
Ying Liu
Suzanne E Peterson
Louise C Laurent
Shinya Yamanaka
Jeanne F Loring
Scripps Research Institute · USGladstone Institutes · USKyoto University · JP

Funding

UC San Diego Womens Reproductive Health Research ProgramK12HD001259 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CYNTHIA GYAMFI-BANNERMAN · 1999 to 2026
$9.1M
Autism iPSCs for Studying Function and Dysfunction in Human Neural DevelopmentR21MH087925 · NIMH · SCRIPPS RESEARCH INSTITUTE, THE · PI LORING, JEANNE F · 2009 to 2010
$572k
NICHD NIH HHS K12 HD001259NICHD NIH HHS K12HD001259-11NIMH NIH HHS R21 MH087925
6 · The paper itself

Abstract

Rapid and dependable methods for isolating human pluripotent stem cell (hPSC) populations are urgently needed for quality control in basic research and in cell-based therapy applications. Using lectin arrays, we analyzed glycoproteins extracted from 26 hPSC samples and 22 differentiated cell samples, and identified a small group of lectins with distinctive binding signatures that were sufficient to distinguish hPSCs from a variety of non-pluripotent cell types. These specific biomarkers were shared by all the 12 human embryonic stem cell and the 14 human induced pluripotent stem cell samples examined, regardless of the laboratory of origin, the culture conditions, the somatic cell type reprogrammed, or the reprogramming method used. We demonstrated a practical application of specific lectin binding by detecting hPSCs within a differentiated cell population with lectin-mediated staining followed by fluorescence microscopy and flow cytometry, and by enriching and purging viable hPSCs from mixed cell populations using lectin-mediated cell separation. Global gene expression analysis showed pluripotency-associated differential expression of specific fucosyltransferases and sialyltransferases, which may underlie these differences in protein glycosylation and lectin binding. Taken together, our results show that protein glycosylation differs considerably between pluripotent and non-pluripotent cells, and demonstrate that lectins may be used as biomarkers to monitor pluripotency in stem cell populations and for removal of viable hPSCs from mixed cell populations.

Indexed as

GlycomicsBiomarkersBiotinCells, CulturedCell SeparationEmbryonic Stem CellsFucosyltransferasesGene Expression ProfilingGlycosylationHumansInduced Pluripotent Stem CellsLectinsPluripotent Stem CellsProtein Array AnalysisProtein BindingSialyltransferasesBiomarkersBiotinFucosyltransferasesLectinsSialyltransferases

Identifiers

PMID21894191
PMCPMC3364725
OpenAlexW2018586077

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.