Evidence map›Paper›PMID 21893601›Full record

ArticleThe Journal of cell biology2011

Comparative RNAi screening identifies a conserved core metazoan actinome by phenotype.

Jennifer L Rohn, David Sims, Tao Liu, Marina Fedorova, Frieder Schöck, Joseph Dopie, Maria K Vartiainen, Amy A Kiger, Norbert Perrimon, Buzz Baum

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of cell biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  5. The Tbx6 Transcription Factor Dorsocross Mediates Dpp Signaling to RegulateInternational journal of molecular sciences · 2022
    Article
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  10. Generating and working with Drosophila cell cultures: Current challenges and opportunities.Wiley interdisciplinary reviews. Developmental biology · 2019
    Review
  11. Article
  12. Article
  13. Sharing and reusing cell image data.Molecular biology of the cell · 2018
    Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 4 countries.

Jennifer L RohnMRC Laboratory for Molecular Cell Biology, University College London, London WC1E 6BT, England, UK. j.rohn@ucl.ac.uk
David Sims
Tao Liu
Marina Fedorova
Frieder Schöck
Joseph Dopie
Maria K Vartiainen
Amy A Kiger
Norbert Perrimon
Buzz Baum
MRC Laboratory for Molecular Cell Biology · GBUniversity of Helsinki · FIBreast Cancer Now · GBHarvard University · USMcGill University · CAUniversity College London · GBUniversity of California, San Diego · US

Funding

Cancer Research UKHoward Hughes Medical InstituteWellcome Trust
6 · The paper itself

Abstract

Although a large number of actin-binding proteins and their regulators have been identified through classical approaches, gaps in our knowledge remain. Here, we used genome-wide RNA interference as a systematic method to define metazoan actin regulators based on visual phenotype. Using comparative screens in cultured Drosophila and human cells, we generated phenotypic profiles for annotated actin regulators together with proteins bearing predicted actin-binding domains. These phenotypic clusters for the known metazoan "actinome" were used to identify putative new core actin regulators, together with a number of genes with conserved but poorly studied roles in the regulation of the actin cytoskeleton, several of which we studied in detail. This work suggests that although our search for new components of the core actin machinery is nearing saturation, regulation at the level of nuclear actin export, RNA splicing, ubiquitination, and other upstream processes remains an important but unexplored frontier of actin biology.

Indexed as

RNA InterferenceActin CytoskeletonActinsAnimalsCarboxy-LyasesCarrier ProteinsCell LineCell NucleusCell ShapeCluster AnalysisDNADrosophila melanogasterDrosophila ProteinsHeLa CellsHemocytesHigh-Throughput Screening AssaysActinsCarboxy-LyasesCarrier ProteinsDNADrosophila ProteinsHyx protein, DrosophilaMicrofilament ProteinsRBX1 protein, humanrho GTP-Binding ProteinsRNA, Double-StrandedRNA, Small InterferingSKP Cullin F-Box Protein LigasesTubulin

Identifiers

PMID21893601
PMCPMC3171124
OpenAlexW2148626203

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.