Evidence map›Paper›PMID 21892792›Full record

ArticleEcotoxicology (London, England)2012

Differential gene expression analysis in Enchytraeus albidus exposed to natural and chemical stressors at different exposure periods.

Sara C Novais, Clara F Howcroft, Laura Carreto, Patrícia M Pereira, Manuel A S Santos, Wim De Coen, Amadeu M V M Soares, Mónica J B Amorim

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Ecotoxicology (London, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Sara C NovaisDepartment of Biology & CESAM, University of Aveiro, 3810-193 Aveiro, Portugal. sara.novais@ua.pt
Clara F Howcroft
Laura Carreto
Patrícia M Pereira
Manuel A S Santos
Wim De Coen
Amadeu M V M Soares
Mónica J B Amorim
University of Aveiro · PTUniversity of Antwerp · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The soil oligochaete Enchytraeus albidus is a standard test organism used in biological testing for Environmental Risk Assessment (ERA). Although effects are known at acute and chronic level through survival, reproduction and avoidance behaviour endpoints, very little is known at the sub-cellular and molecular levels. In this study, the effects of soil properties (clay, organic matter and pH) and of the chemicals copper and phenmedipham were studied on E. albidus gene expression, during exposure periods of 2, 4 and 21 days, using DNA microarrays based on a normalised cDNA library for this test species (Amorim et al. 2011). The main objectives of this study were: (1) to assess changes in gene expression of E. albidus over time, and (2) to identify molecular markers for natural and chemical exposures. Results showed an influence of exposure time on gene expression. Transcriptional responses to phenmedipham were seen at 2 days while the responses to copper and the different soils were more pronounced at 4 days of exposure. Some genes were differentially expressed in a stress specific manner and, in general, the responses were related with effects in the energy metabolism and cell growth.

Indexed as

Aluminum SilicatesAnimalsCarbamatesClayComputational BiologyCopperDNA PrimersEnvironmental MonitoringGene ExpressionGene LibraryOligochaetaOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionReproducibility of ResultsReproductionSequence Analysis, RNAAluminum SilicatesCarbamatesClayCopperDNA PrimersphenmediphamSoilSoil Pollutants

Identifiers

PMID21892792
OpenAlexW1982217344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.