Evidence map›Paper›PMID 21890649›Full record

ArticlePlant physiology2011

Identification of enzyme activity quantitative trait loci in a Solanum lycopersicum x Solanum pennellii introgression line population.

Marie-Caroline Steinhauser, Dirk Steinhauser, Yves Gibon, Marie Bolger, Stéphanie Arrivault, Björn Usadel, Dani Zamir, Alisdair R Fernie, Mark Stitt

Abstract read
In one paragraph

Article in Plant physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marie-Caroline SteinhauserMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany. mcdurand@fundp.ac.be
Dirk Steinhauser
Yves Gibon
Marie Bolger
Stéphanie Arrivault
Björn Usadel
Dani Zamir
Alisdair R Fernie
Mark Stitt

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Activities of 28 enzymes from central carbon metabolism were measured in pericarp tissue of ripe tomato fruits from field trials with an introgression line (IL) population generated by introgressing segments of the genome of the wild relative Solanum pennellii (LA0716) into the modern tomato cultivar Solanum lycopersicum M82. Enzyme activities were determined using a robotized platform in optimized conditions, where the activities largely reflect the level of the corresponding proteins. Two experiments were analyzed from years with markedly different climate conditions. A total of 27 quantitative trait loci were shared in both experiments. Most resulted in increased enzyme activity when a portion of the S. lycopersicum genome was substituted with the corresponding portion of the genome of S. pennellii. This reflects the change in activity between the two parental genotypes. The mode of inheritance was studied in a heterozygote IL population. A similar proportion of quantitative trait loci (approximately 30%) showed additive, recessive, and dominant modes of inheritance, with only 5% showing overdominance. Comparison with the location of putative genes for the corresponding proteins indicates a large role of trans-regulatory mechanisms. These results point to the genetic control of individual enzyme activities being under the control of a complex program that is dominated by a network of trans-acting genes.

Indexed as

Crosses, GeneticInbreedingAnalysis of VarianceChromosome MappingEnzyme AssaysGenes, PlantGenetics, PopulationGlycolysisHomozygoteInheritance PatternsQuantitative Trait, HeritableQuantitative Trait LociSolanumSolanum lycopersicumStatistics as Topic

Identifiers

PMID21890649
PMCPMC3252166

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.