Evidence map›Paper›PMID 21889510›Full record

ArticleJournal of immunological methods2011

A new model for the estimation of cell proliferation dynamics using CFSE data.

H T Banks, Karyn L Sutton, W Clayton Thompson, Gennady Bocharov, Marie Doumic, Tim Schenkel, Jordi Argilaguet, Sandra Giest, Cristina Peligero, Andreas Meyerhans

Abstract read
In one paragraph

Article in Journal of immunological methods, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Quantifying T lymphocyte turnover.Journal of theoretical biology · 2013
    Article
  11. Quantifying CFSE Label Decay in Flow Cytometry Data.Applied mathematics letters · 2013
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

H T BanksCenter for Research in Scientific Computation, North Carolina State University, Raleigh, NC 27695-8212, USA. htbanks@ncsu.edu
Karyn L Sutton
W Clayton Thompson
Gennady Bocharov
Marie Doumic
Tim Schenkel
Jordi Argilaguet
Sandra Giest
Cristina Peligero
Andreas Meyerhans

Funding

Mathematical and Statistical Modeling to Inform Design of HIV Clinical TrialsR01AI071915 · NIAID · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI BANKS, H. THOMAS · 2006 to 2012
$4.6M
NIAID NIH HHS 9R01AI071915,NIAID NIH HHS R01 AI071915
6 · The paper itself

Abstract

CFSE analysis of a proliferating cell population is a popular tool for the study of cell division and divisionlinked changes in cell behavior. Recently Banks et al. (2011), Luzyanina et al. (2009), Luzyanina et al. (2007), a partial differential equation (PDE) model to describe lymphocyte dynamics in a CFSE proliferation assay was proposed. We present a significant revision of this model which improves the physiological understanding of several parameters. Namely, the parameter used previously as a heuristic explanation for the dilution of CFSE dye by cell division is replaced with a more physical component, cellular autofluorescence. The rate at which label decays is also quantified using a Gompertz decay process. We then demonstrate a revised method of fitting the model to the commonly used histogram representation of the data. It is shown that these improvements result in a model with a strong physiological basis which is fully capable of replicating the behavior observed in the data.

Indexed as

Cell ProliferationModels, BiologicalAlgorithmsCell DivisionFlow CytometryFluoresceinsFluorescent DyesHumansKineticsLeukocytes, MononuclearLymphocytesMolecular Dynamics SimulationSuccinimides5-(6)-carboxyfluorescein diacetate succinimidyl esterFluoresceinsFluorescent DyesSuccinimides

Identifiers

PMID21889510
PMCPMC3196292

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.