Evidence map›Paper›PMID 21887796›Full record

ArticleBiometrical journal. Biometrische Zeitschrift2011

Latent variable modeling paradigms for genotype-trait association studies.

Yan Liu, Andrea S Foulkes

Abstract read
In one paragraph

Article in Biometrical journal. Biometrische Zeitschrift, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yan LiuDivision of Biostatistics, 404 Arnold House, 715 North Pleasant Street, Amherst, MA 01003, USA.
Andrea S Foulkes

Funding

Methods for high-dimensional data in HIV/CVD researchR01HL107196 · NHLBI · UNIVERSITY OF MASSACHUSETTS AMHERST · PI FOULKES, ANDREA S · 2011 to 2015
$2.0M
Methods for high-dimensional data in HIV researchR01AI056983 · NIAID · UNIVERSITY OF MASSACHUSETTS AMHERST · PI FOULKES, ANDREA S · 2005 to 2009
$1.5M
NHLBI NIH HHS R01 HL107196NHLBI NIH HHS R01HL107196NIAID NIH HHS R01 AI056983NIDDK NIH HHS R01DK021224
6 · The paper itself

Abstract

Characterizing associations among multiple single-nucleotide polymorphisms (SNPs) within and across genes, and measures of disease progression or disease status will potentially offer new insight into disease etiology and disease progression. However, this presents a significant analytic challenge due to the existence of multiple potentially informative genetic loci, as well as environmental and demographic factors, and the generally uncharacterized and complex relationships among them. Latent variable modeling approaches offer a natural framework for analysis of data arising from these population-based genetic association investigations of complex diseases as they are well-suited to uncover simultaneous effects of multiple markers. In this manuscript we describe application and performance of two such latent variable methods, namely structural equation models (SEMs) and mixed effects models (MEMs), and highlight their theoretical overlap. The relative advantages of each paradigm are investigated through simulation studies and, finally, an application to data arising from a study of anti-retroviral-associated dyslipidemia in HIV-infected individuals is provided for illustration.

Indexed as

GenotypeModels, GeneticModels, StatisticalAnti-HIV AgentsBayes TheoremDiseaseDisease ProgressionDyslipidemiasHIV-1HIV InfectionsHumansPolymorphism, Single NucleotideAnti-HIV Agents

Identifiers

PMID21887796
PMCPMC3312474

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.