ArticlePlant molecular biology2011
Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice.
Article in Plant molecular biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 22 citations in OpenAlex.
- Transcriptomic and proteomic insights into the molecular mechanism underlying cell wall biosynthesis in Moso bamboo (Phyllostachys edulis).Plant cell reports · 2026Article
- Optimization of Protoplast Preparation Conditions inJournal of fungi (Basel, Switzerland) · 2024Article
- Genome-Wide Association-Based Identification of Alleles, Genes and Haplotypes Influencing Yield in Rice (International journal of molecular sciences · 2024Article
- An integrated physiology, cytology, and proteomics analysis reveals a network of sugarcane protoplast responses to enzymolysis.Frontiers in plant science · 2022Article
- Autopolyploidization affects transcript patterns and gene targeting frequencies in Physcomitrella.Plant cell reports · 2022Article
- Identification of protoplast-isolation responsive microRNAs in Citrus reticulata Blanco by high-throughput sequencing.PloS one · 2017Article
- Sweet sorghum as biofuel feedstock: recent advances and available resources.Biotechnology for biofuels · 2017Review
- Fine-mapping and validating qHTSF4.1 to increase spikelet fertility under heat stress at flowering in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Identification of proteins of altered abundance in oil palm infected with Ganoderma boninense.International journal of molecular sciences · 2014Article
- Nuclear proteome response to cell wall removal in rice (Oryza sativa).Proteome science · 2013Article
- Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research.Frontiers in plant science · 2013Article
- Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families.Frontiers in plant science · 2012Article
Corrections and comments
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Efficient and cost-effective conversion of plant biomass to usable forms of energy requires a thorough understanding of cell wall biosynthesis, modification and degradation. To elucidate these processes, we assessed the expression dynamics during enzymatic removal and regeneration of rice cell walls in suspension cells over time. In total, 928 genes exhibited significant up-regulation during cell wall removal, whereas, 79 genes were up-regulated during cell wall regeneration. Both gene sets are enriched for kinases, transcription factors and genes predicted to be involved in cell wall-related functions. Integration of the gene expression datasets with a catalog of known and/or predicted biochemical pathways from rice, revealed metabolic and hormonal pathways involved in cell wall degradation and regeneration. Rice lines carrying Tos17 mutations in genes up-regulated during cell wall removal exhibit dwarf phenotypes. Many of the genes up-regulated during cell wall development are also up-regulated in response to infection and environmental perturbations indicating a coordinated response to diverse types of stress.
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