Evidence map›Paper›PMID 21886861›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33).

A Christine Munk, Alla Lapidus, Susan Lucas, Matt Nolan, Hope Tice, Jan-Fang Cheng, Tijana Glavina Del Rio, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios and 27 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 6 institutions in 3 countries.

A Christine Munk
Alla Lapidus
Susan Lucas
Matt Nolan
Hope Tice
Jan-Fang Cheng
Tijana Glavina Del Rio
Lynne Goodwin
Sam Pitluck
Konstantinos Liolios
Marcel Huntemann
Natalia Ivanova
Konstantinos Mavromatis
Natalia Mikhailova
Amrita Pati
Amy Chen
Krishna Palaniappan
Roxanne Tapia
Cliff Han
Miriam Land
Loren Hauser
Yun-Juan Chang
Cynthia D Jeffries
Thomas Brettin
Montri Yasawong
Evelyne-Marie Brambilla
Manfred Rohde
Johannes Sikorski
Markus Göker
John C Detter
Tanja Woyke
James Bristow
Jonathan A Eisen
Victor Markowitz
Philip Hugenholtz
Nikos C Kyrpides
Hans-Peter Klenk
Joint Genome Institute · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DELawrence Berkeley National Laboratory · USHelmholtz Centre for Infection Research · DEOak Ridge National Laboratory · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest because of its isolated phylogenetic location, but also because it is a human opportunistic pathogen with some strains of the species reported to cause lung infection, lethal meningitis, and necrotizing tenosynovitis. This is the first completed genome sequence of a member of the genus Tsukamurella and the first genome sequence of a member of the family Tsukamurellaceae. The 4,479,724 bp long genome contains a 99,806 bp long plasmid and a total of 4,335 protein-coding and 56 RNA genes, and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Indexed as

chemoorganotrophicGEBAGram-positivemesophilicmetachromatic granulesnon-motileobligately aerobicopportunistic pathogenTsukamurellaceae

Identifiers

PMID21886861
PMCPMC3156402
OpenAlexW2019749920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.