Evidence map›Paper›PMID 21886856›Full record

ArticleStandards in genomic sciences2011

Complete genome sequence of Rhodospirillum rubrum type strain (S1).

A Christine Munk, Alex Copeland, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Kerrie Barry, John C Detter, Nancy Hammon, Sanjay Israni, Sam Pitluck and 18 more

Open access · goldAbstract read
In one paragraph

Article in Standards in genomic sciences, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Differences in cell-associated and cell-free microbial DNA in blood.bioRxiv : the preprint server for biology · 2025
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  3. Cultivation driven transcriptomic changes in the wild-type and mutant strains ofComputational and structural biotechnology journal · 2024
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  9. Study of the Production of Poly(Hydroxybutyrate-Applied and environmental microbiology · 2022
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  10. Suppression ofFrontiers in molecular biosciences · 2021
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Microbial pathway for anaerobic 5'-methylthioadenosine metabolism coupled to ethylene formation.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 6 institutions in 2 countries.

A Christine Munk
Alex Copeland
Susan Lucas
Alla Lapidus
Tijana Glavina Del Rio
Kerrie Barry
John C Detter
Nancy Hammon
Sanjay Israni
Sam Pitluck
Thomas Brettin
David Bruce
Cliff Han
Roxanne Tapia
Paul Gilna
Jeremy Schmutz
Frank Larimer
Miriam Land
Nikos C Kyrpides
Konstantinos Mavromatis
Paul Richardson
Manfred Rohde
Markus Göker
Hans-Peter Klenk
Yaoping Zhang
Gary P Roberts
Susan Reslewic
David C Schwartz
Joint Genome Institute · USLos Alamos National Laboratory · USUniversity of Wisconsin–Madison · USLeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEHelmholtz Centre for Infection Research · DEUniversity of California, San Diego · US

Funding

PII: multiple homologs of a global regulatorR01GM065891 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ROBERTS, GARY PAUL · 2002 to 2011
$2.0M
Molecular basis of PII functionR56GM065891 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ROBERTS, GARY PAUL · 2007 to 2007
$203k
NIGMS NIH HHS R01 GM065891NIGMS NIH HHS R56 GM065891
6 · The paper itself

Abstract

Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 is the type species of the genus Rhodospirillum, which is the type genus of the family Rhodospirillaceae in the class Alphaproteobacteria. The species is of special interest because it is an anoxygenic phototroph that produces extracellular elemental sulfur (instead of oxygen) while harvesting light. It contains one of the most simple photosynthetic systems currently known, lacking light harvesting complex 2. Strain S1(T) can grow on carbon monoxide as sole energy source. With currently over 1,750 PubMed entries, R. rubrum is one of the most intensively studied microbial species, in particular for physiological and genetic studies. Next to R. centenum strain SW, the genome sequence of strain S1(T) is only the second genome of a member of the genus Rhodospirillum to be published, but the first type strain genome from the genus. The 4,352,825 bp long chromosome and 53,732 bp plasmid with a total of 3,850 protein-coding and 83 RNA genes were sequenced as part of the DOE Joint Genome Institute Program DOEM 2002.

Indexed as

AlphaproteobacteriaDOEM 2002facultatively anaerobicGram-negativemesophilemotilephotolithotrophicRhodospirillaceae

Identifiers

PMID21886856
PMCPMC3156396
OpenAlexW2044401510

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.