Evidence map›Paper›PMID 21886846›Full record

ArticlePloS one2011

Co-regulation of histone-modifying enzymes in cancer.

Abul B M M K Islam, William F Richter, Laura A Jacobs, Nuria Lopez-Bigas, Elizaveta V Benevolenskaya

Abstract read
In one paragraph

Article in PloS one, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Fetal iron deficiency induces chromatin remodeling at the Bdnf locus in adult rat hippocampus.American journal of physiology. Regulatory, integrative and comparative physiology · 2015
    Article
  5. Review
  6. Article
  7. SysPTM 2.0: an updated systematic resource for post-translational modification.Database : the journal of biological databases and curation · 2014
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Abul B M M K IslamDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, Illinois, United States of America.
William F Richter
Laura A Jacobs
Nuria Lopez-Bigas
Elizaveta V Benevolenskaya

Funding

RBP2 regulation through differential recruitment to genomic lociR01CA138631 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI BENEVOLENSKAYA, ELIZAVETA V · 2010 to 2014
$1.6M
NCI NIH HHS R01 CA138631NCI NIH HHS R01CA138631
6 · The paper itself

Abstract

Cancer is characterized by aberrant patterns of expression of multiple genes. These major shifts in gene expression are believed to be due to not only genetic but also epigenetic changes. The epigenetic changes are communicated through chemical modifications, including histone modifications. However, it is unclear whether the binding of histone-modifying proteins to genomic regions and the placing of histone modifications efficiently discriminates corresponding genes from the rest of the genes in the human genome. We performed gene expression analysis of histone demethylases (HDMs) and histone methyltransferases (HMTs), their target genes and genes with relevant histone modifications in normal and tumor tissues. Surprisingly, this analysis revealed the existence of correlations in the expression levels of different HDMs and HMTs. The observed HDM/HMT gene expression signature was specific to particular normal and cancer cell types and highly correlated with target gene expression and the expression of genes with histone modifications. Notably, we observed that trimethylation at lysine 4 and lysine 27 separated preferentially expressed and underexpressed genes, which was strikingly different in cancer cells compared to normal cells. We conclude that changes in coordinated regulation of enzymes executing histone modifications may underlie global epigenetic changes occurring in cancer.

Indexed as

Epigenesis, GeneticGene Expression ProfilingGene Expression Regulation, NeoplasticHistone DemethylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesHumansNeoplasmsHistone DemethylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistones

Identifiers

PMID21886846
PMCPMC3160334

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.