Evidence map›Paper›PMID 21884940›Full record

ArticleCell2011

Global proteomic assessment of the classical protein-tyrosine phosphatome and "Redoxome".

Robert Karisch, Minerva Fernandez, Paul Taylor, Carl Virtanen, Jonathan R St-Germain, Lily L Jin, Isaac S Harris, Jun Mori, Tak W Mak, Yotis A Senis and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 176 citations in OpenAlex.

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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Robert KarischDepartment of Medical Biophysics, University of Toronto, Toronto M5G 2M9, ON, Canada. rkarisch@uhnresearch.ca
Minerva Fernandez
Paul Taylor
Carl Virtanen
Jonathan R St-Germain
Lily L Jin
Isaac S Harris
Jun Mori
Tak W Mak
Yotis A Senis
Arne Östman
Michael F Moran
Benjamin G Neel
University of Toronto · CAPrincess Margaret Cancer Centre · CAUniversity Health Network · CAUniversity of Birmingham · GBKarolinska Institutet · SE

Funding

Signal Transduction by Non-transmembrane PTPsR37CA049152 · NCI · UNIVERSITY HEALTH NETWORK · PI NEEL, BENJAMIN G. · 2004 to 2013
$4.0M
British Heart Foundation FS/08/034/25085British Heart Foundation PG/07/034/22775CIHRNCI NIH HHS R37 CA049152NCI NIH HHS R37CA49152
6 · The paper itself

Abstract

Protein-tyrosine phosphatases (PTPs), along with protein-tyrosine kinases, play key roles in cellular signaling. All Class I PTPs contain an essential active site cysteinyl residue, which executes a nucleophilic attack on substrate phosphotyrosyl residues. The high reactivity of the catalytic cysteine also predisposes PTPs to oxidation by reactive oxygen species, such as H(2)O(2). Reversible PTP oxidation is emerging as an important cellular regulatory mechanism and might contribute to diseases such as cancer. We exploited these unique features of PTP enzymology to develop proteomic methods, broadly applicable to cell and tissue samples, that enable the comprehensive identification and quantification of expressed classical PTPs (PTPome) and the oxidized subset of the PTPome (oxPTPome). We find that mouse and human cells and tissues, including cancer cells, display distinctive PTPomes and oxPTPomes, revealing additional levels of complexity in the regulation of protein-tyrosine phosphorylation in normal and malignant cells.

Indexed as

AnimalsCell LineHumansMiceMice, Inbred C57BLNeoplasmsOxidation-ReductionProtein Tyrosine PhosphatasesProteomicsRatsProtein Tyrosine Phosphatases

Identifiers

PMID21884940
PMCPMC3176638
OpenAlexW1969277972

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.