Evidence map›Paper›PMID 21883801›Full record

ArticleEnvironmental microbiology2011

The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization.

Alecia N Septer, Yanling Wang, Edward G Ruby, Eric V Stabb, Anne K Dunn

Abstract read
In one paragraph

Article in Environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  6. Lighting the way: how theJournal of bacteriology · 2024
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  16. Article
  17. Radical new paradigm for heme degradation in Escherichia coli O157:H7.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Vibrio Iron Transport: Evolutionary Adaptation to Life in Multiple Environments.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Alecia N SepterDepartment of Microbiology, University of Georgia, Athens, GA 30602, USA.
Yanling Wang
Edward G Ruby
Eric V Stabb
Anne K Dunn
University of Georgia · USUniversity of Wisconsin–Madison · USUniversity of Oklahoma · US

Funding

VIBRIO VIRULENCE DETERMINANTS IN A BENIGN COLONIZATIONR01RR012294 · NCRR · UNIVERSITY OF WISCONSIN-MADISON · PI RUBY, EDWARD G · 1996 to 2011
$6.4M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
NCRR NIH HHS R01 RR012294NCRR NIH HHS RR12294NIH HHS R01 OD011024
6 · The paper itself

Abstract

Although it is accepted that bacteria-colonizing host tissues are commonly faced with iron-limiting conditions and that pathogenic bacteria often utilize iron from host-derived haem-based compounds, the mechanisms of iron acquisition by beneficial symbiotic bacteria are less clear. The bacterium Vibrio fischeri mutualistically colonizes the light organ of the squid Euprymna scolopes. Genome sequence analysis of V. fischeri revealed a putative haem-uptake gene cluster, and through mutant analysis we confirmed this cluster is important for haemin use by V. fischeri in culture. LacZ reporter assays demonstrated Fur-dependent transcriptional regulation of cluster promoter activity in culture. GFP-based reporter assays revealed that gene cluster promoter activity is induced in symbiotic V. fischeri as early as 14 h post inoculation, although colonization assays with the haem uptake mutant suggested an inability to uptake haem does not begin to limit colonization until later stages of the symbiosis. Our data indicate that the squid light organ is a low iron environment and that haem-based sources of iron are used by symbiotic V. fischeri cells. These findings provide important additional information on the availability of iron during symbiotic colonization of E. scolopes by V. fischeri, as well as the role of haem uptake in non-pathogenic host-microbe interactions.

Indexed as

Multigene FamilyAliivibrio fischeriAnimalsBacterial ProteinsDecapodiformesGene Expression Regulation, BacterialGenome, BacterialHemeHeminIronPromoter Regions, GeneticRepressor ProteinsSymbiosisBacterial Proteinsferric uptake regulating proteins, bacterialHemeHeminIronRepressor Proteins

Identifiers

PMID21883801
PMCPMC4000482
OpenAlexW2129970010

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.