Evidence map›Paper›PMID 21883799›Full record

ArticleEnvironmental microbiology2012

Microbial rhodopsins on leaf surfaces of terrestrial plants.

Nof Atamna-Ismaeel, Omri M Finkel, Fabian Glaser, Itai Sharon, Ron Schneider, Anton F Post, John L Spudich, Christian von Mering, Julia A Vorholt, David Iluz and 2 more

Abstract read
In one paragraph

Article in Environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 106 citations in OpenAlex.

  1. International journal of systematic and evolutionary microbiology · 2025
    Article
  2. Article
  3. Article
  4. Leaf-Associated Epiphytic Fungi ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  5. Microorganisms associated withFrontiers in microbiology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Biochemical Analysis of Microbial Rhodopsins.Current protocols in microbiology · 2016
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 9 institutions in 6 countries.

Nof Atamna-IsmaeelFaculty of Biology, Lorry I Lokey Interdisciplinary Center for Life Sciences and Engineering, Faculty of Computer Science, Technion - Israel Institute of Technology, Haifa 32000, Israel.
Omri M Finkel
Fabian Glaser
Itai Sharon
Ron Schneider
Anton F Post
John L Spudich
Christian von Mering
Julia A Vorholt
David Iluz
Oded Béjà
Shimshon Belkin
Faculty (United Kingdom) · GBHebrew University of Jerusalem · ILBar-Ilan University · ILCenter for Life Sciences · CNETH Zurich · CHMarine Biological Laboratory · USMS Technology (United States) · USSIB Swiss Institute of Bioinformatics · CHThe University of Texas at Austin · US

Funding

Structure/Function of Microbial Sensory RhodopsinsR37GM027750 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SPUDICH, JOHN LEE · 2003 to 2012
$6.0M
NIGMS NIH HHS R37 GM027750NIGMS NIH HHS R37GM27750
6 · The paper itself

Abstract

The above-ground surfaces of terrestrial plants, the phyllosphere, comprise the main interface between the terrestrial biosphere and solar radiation. It is estimated to host up to 10(26) microbial cells that may intercept part of the photon flux impinging on the leaves. Based on 454-pyrosequencing-generated metagenome data, we report on the existence of diverse microbial rhodopsins in five distinct phyllospheres from tamarisk (Tamarix nilotica), soybean (Glycine max), Arabidopsis (Arabidopsis thaliana), clover (Trifolium repens) and rice (Oryza sativa). Our findings, for the first time describing microbial rhodopsins from non-aquatic habitats, point towards the potential coexistence of microbial rhodopsin-based phototrophy and plant chlorophyll-based photosynthesis, with the different pigments absorbing non-overlapping fractions of the light spectrum.

Indexed as

Phototrophic ProcessesEcosystemLightMetagenomePhotosynthesisPhylogenyPlant LeavesPlantsRhodopsins, MicrobialRhodopsins, Microbial

Identifiers

PMID21883799
PMCPMC3608849
OpenAlexW1881925651

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.